Keywords: decoding modules, structural variation, ascorbate, wheat

Latest 23 Papers

Physics-Informed Neural Network Methods for Predicting Plant Height Development

Authors: Shao, Y., van Eeuwijk, F., Peeters, C., Zumsteg, O., Athanasiadis, I., van Voorn, G.

Date: 2026-01-14 · Version: 1

DOI: 10.64898/2026.01.14.699475

Model Organism: Triticum aestivum

Physics-Informed Neural Network logistic ODE Long Short-Term Memory plant height prediction wheat

A dual genomic-epigenomic map of clonal evolution in grapevine

Authors: Callipo, P., Robinson, H., Schmidt, M., Voss-Fels, K. P.

Date: 2026-01-09 · Version: 1

DOI: 10.64898/2026.01.09.698625

Model Organism: Vitis vinifera

Vitis vinifera clonal genetic variation structural variation CG DNA methylation Oxford Nanopore sequencing

Chromosome-scale Solanum pennellii and Solanum cheesmaniae genome assemblies reveal structural variants, repeat content and recombination barriers of the tomato clade

Authors: van Rengs, W., Fuentes, R. R., Zangishei, Z., Primetis, E., Wang, Y., Fernandes, J., Susanto, T., Lian, Q., Effgen, S., Huettel, B., Alseekh, S., Usadel, B., Underwood, C. J.

Date: 2025-12-20 · Version: 1

DOI: 10.64898/2025.12.19.695418

Model Organism: Solanum lycopersicum

chromosome-scale genome assembly Solanum pennellii Solanum cheesmaniae structural variation recombination landscape

Evolution of HMA-integrated tandem kinases accompanied by expansion of target pathogens

Authors: Asuke, S., Tagle, A. G., Hyon, G.-S., Koizumi, S., Murakami, T., Horie, A., Niwamoto, D., Katayama, E., Shibata, M., Takahashi, Y., Islam, M. T., Matsuoka, Y., Yamaji, N., Shimizu, M., Terauchi, R., Hisano, H., Sato, K., Tosa, Y.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.15.692859

Model Organism: Multi-species

tandem kinase proteins HMA domain disease resistance barley wheat

Genomic Structural Variation Underlies Cell-Type-Specific Betacyanin Variegation in Chenopodium quinoa

Authors: Zhang, Z., Wang, Y., Hu, X., Yu, T., Feng, Y., Zhang, J., Zhang, T., Feng, G., Zhang, H.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694152

Model Organism: Chenopodium quinoa

betacyanin biosynthesis CYP76AD epidermal bladder cells structural variation subgenome specialization

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

Targeting granule initiation and amyloplast structure to create giant starch granules in wheat

Authors: McNelly, R., Esch, L., Ngai, Q. Y., Pohan, K., Stringer, R., Fahy, B., Warren, F., Seung, D.

Date: 2025-12-15 · Version: 1

DOI: 10.64898/2025.12.12.693964

Model Organism: Triticum aestivum

starch granule size PARC6 BGC1 wheat giant starch granules

Glycosylated diterpenes associate with early containment of Fusarium culmorum infection across wheat (Triticum aestivum L.) genotypes under field conditions

Authors: Pieczonka, S. A., Dick, F., Bentele, M., Ramgraber, L., Prey, L., Kupczyk, E., Seidl-Schulz, J., Hanemann, A., Noack, P. O., Asam, S., Schmitt-Kopplin, P., Rychlik, M.

Date: 2025-12-04 · Version: 1

DOI: 10.64898/2025.12.02.691979

Model Organism: Triticum aestivum

wheat Fusarium head blight deoxynivalenol untargeted metabolomics diterpene conjugates

Chromosome-scale haplotype genome assemblies for the Australian mango 'Kensington Pride' 1 and a wild relative, Mangifera laurina, provide insights into anthracnose-resistance and volatile 2 compound biosynthesis genes

Authors: Wijesundara, U. K., Furtado, A., Masouleh, A., Dillon, N. L., Smyth, H., Henry, R. J.

Date: 2025-11-27 · Version: 1

DOI: 10.1101/2025.11.24.690335

Model Organism: Mangifera indica

Mangifera indica PacBio HiFi genome assembly anthracnose resistance structural variation carotenoid and terpenoid biosynthesis

Dual recognition of structurally unrelated mildew effectors underlies the broad-spectrum resistance of Pm3e in wheat

Authors: Kunz, L., Bernasconi, Z., Heuberger, M., Isaksson, J., Sotiropoulos, A. G., Stirnemann, U., Jigisha, J., Menardo, F., Wicker, T., Mueller, M. C., Keller, B.

Date: 2025-10-30 · Version: 2

DOI: 10.1101/2025.10.26.683672

Model Organism: Triticum aestivum (wheat)

broad-spectrum resistance NLR receptors Pm3 alleles powdery mildew effectors wheat

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