Keywords: decoding modules, transcriptome, CO2-fixing enzyme, ascorbate, genomic prediction

Latest 11 Papers

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

Rubisco Dark Inhibition in Angiosperms Shows a Complex Distribution Pattern

Authors: Nehls-Ramos, C., Carmo-Silva, E., Orr, D. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.20.689527

Model Organism: Multi-species

Rubisco dark inhibition flowering plants phylogenetic analysis photosynthetic regulation CO2-fixing enzyme

Highly polygenic control of photosynthetic responses to nighttime temperature in Arabidopsis studied by genomic prediction

Authors: dos Santos Sa, A. C., Bazarova, A., Fischbach, A., Kesselheim, S., Stich, B., Matsubara, S.

Date: 2025-11-10 · Version: 1

DOI: 10.1101/2025.11.08.687332

Model Organism: Arabidopsis thaliana

nighttime temperature photosynthetic efficiency (Fq/Fm)genome‑wide association study genomic prediction Arabidopsis thaliana

Population-level super-pangenome reveals genome evolution and empowers precision breeding in watermelon

Authors: Sun, H., Zhang, J., Liao, S., Guo, S., Zhou, Z., Zhao, X., Wu, S., Zhao, J., Gong, G., Wang, J., Li, M., Yu, Y., Ren, Y., Tian, S., Li, S., Zhang, H., Hammar, S. A., McGregor, C., Jarret, R., Wechter, P., Branham, S. E., Kousik, C., Levi, A., Grumet, R., Xu, Y., Fei, Z.

Date: 2025-07-27 · Version: 1

DOI: 10.1101/2025.07.25.666869

Model Organism: Citrullus lanatus (watermelon)

watermelon super-pangenome structural variants genome-wide association study copy number variation genomic prediction

Graph pangenome reveals structural variation dynamics during cucumber breeding

Authors: Zhao, X., Yu, J., Zhang, J., Sun, H., Wu, S., Zhao, J., Zhou, Y., Hammar, S., Lin, Y.-C., Zhang, Z., Huang, S., Dymerski, R., Chen, F., Weng, Y., Grumet, R., Xu, Y., Fei, Z.

Date: 2025-07-21 · Version: 1

DOI: 10.1101/2025.07.17.665377

Model Organism: Cucumis sativus

structural variants graph pangenome cucumber domestication genomic prediction purifying selection

Tomato leaf transcriptomic changes promoted by long-term water scarcity stress can be largely prevented by a fungal-based biostimulant

Authors: Lopez-Serrano, L., Ferez-Gomez, A., Romero-Aranda, R., Jaime Fernandez, E., Leal Lopez, J., Fernandez Baroja, E., Almagro, G., Dolezal, K., Novak, O., Diaz, L., Bautista, R., Leon Morcillo, R. J., Pozueta Romero, J.

Date: 2025-06-28 · Version: 1

DOI: 10.1101/2025.06.26.661737

Model Organism: Solanum lycopersicum

water deficit Trichoderma harzianum culture filtrate tomato drought tolerance transcriptome

Optimizing population simulations to accurately parallel empirical data for digital breeding

Authors: Burns, M. J., Della Coletta, R., Fernandes, S. B., Bohn, M. O., Lipka, A. E., Hirsch, C. N.

Date: 2025-06-24 · Version: 1

DOI: 10.1101/2025.06.18.660215

Model Organism: Zea mays

digital breeding GWAS-informed simulation maize phenotypic prediction genomic prediction

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Genomic insights and breeding strategies for nixtamalization moisture content in hybrid maize

Authors: Burns, M. J., Berry, S. P., Loftus, M., Gilbert, A. M., Hirsch, C. N.

Date: 2025-04-24 · Version: 1

DOI: 10.1101/2025.04.23.650239

Model Organism: Zea mays

nixtamalization moisture content genomic prediction additive and dominance effects maize hybrids NIR spectroscopy

The FIP 1.0 Data Set: Highly Resolved Annotated Image Time Series of 4,000 Wheat Plots Grown in Six Years

Authors: Roth, L., Boss, M., Kirchgessner, N., Aasen, H., Aguirre-Cuellar, B. P., Akiina, P. P. A., Anderegg, J., Gajardo Castillo, J., Chen, X., Corrado, S., Cybulski, K., Keller, B., Kortstee, S. G., Kronenberg, L., Liebisch, F., Nousi, P., Oppliger, C., Perich, G., Pfeifer, J., Yu, K., Storni, N., Tschurr, F., Volpi, M., Treier, S., Zellweger, H., Zumsteg, O., Hund, A., Walter, A.

Date: 2025-03-11 · Version: 3

DOI: 10.1101/2024.10.04.616624

Model Organism: Triticum aestivum

genotype‑environment interaction winter wheat high‑throughput phenotyping genomic prediction crop modeling

Page 1 of 2Next