A comparative physiological study of persimmon cultivars with flat (Hiratanenashi) and round (Koushimaru) fruit shapes revealed that differences in cell proliferation, cell shape, and size contribute to shape variation. Principal component analysis of elliptic Fourier descriptors tracked shape changes, while histology and transcriptome profiling identified candidate genes, including a WOX13 homeobox gene, potentially governing fruit shape development.

The study applied Spatial Analysis of Field Trials with Splines (SpATS) and Neighbor Genome-Wide Association Study (Neighbor GWAS) to barley field data, revealing that neighboring genotypes contribute to spatial variation in disease damage. Neighbor GWAS identified variants on chromosome 7H that modestly affect net form net blotch and scald resistance, suggesting that genotype mixtures could mitigate pest damage.

The study evaluated natural genetic variation in non-photochemical quenching and photoprotection across 861 sorghum accessions grown in the field over two years, revealing moderate to high broad-sense heritability for chlorophyll fluorescence traits. By integrating genome-wide association studies (GWAS) with transcriptome-wide association studies (TWAS) and covariance analyses, the authors identified 110 high-confidence candidate genes underlying photoprotection, highlighting a complex, polygenic architecture for these traits.

The study examined salt-induced alterations in root system architecture across a diverse panel of wild and cultivated tomato accessions, identifying tolerant varieties with distinct lateral root strategies. By combining Bulk Segregant Analysis of an F2 population with GWAS, the authors pinpointed 22 candidate genes, further narrowing to two key regulators through RNA‑Seq and functional assays involving ethylene and ROS profiling. These findings reveal genetic targets for improving salt resilience in tomato root development.

The study investigates the role of the Arabidopsis transcription factor AtMYB93 in sulfur (S) signaling and root development, revealing that AtMYB93 mutants exhibit altered expression of S transport and metabolism genes and increased shoot S levels, while tomato plants overexpressing SlMYB93 show reduced shoot S. Transcriptomic profiling, elemental analysis, and promoter activity assays indicate that AtMYB93 contributes to root responses to S deprivation, though functional redundancy masks clear phenotypic effects on lateral and adventitious root formation.

The study examined how genetic variation among 181 wheat (Triticum aestivum) lines influences root endophytic fungal communities using ITS2 metabarcoding. Heritability estimates and GWAS identified 11 QTLs linked to fungal clade composition, highlighting genetic control of mycobiota, especially for biotrophic AMF. These findings suggest breeding can be used to modulate beneficial root-fungal associations.

The study surveyed vegetative water use and life‑history traits across Arabidopsis thaliana ecotypes in both controlled and outdoor environments to assess how climatic history shapes water‑use strategies. Trait‑climate correlations and genome‑wide association analyses uncovered that ecotypes from warmer regions exhibit higher water use, and identified MYB59 as a key gene whose temperature‑linked alleles affect water consumption, a finding validated using myb59 mutants. These results indicate that temperature‑driven adaptive differentiation partly explains intraspecific water‑use variation.

The study performed transcriptome profiling of Cryptomeria japonica individuals from different geographic origins grown in three common gardens across Japan, assembling 77,212 transcripts guided by the species' genome. Using SNP-based genetic clustering and weighted gene co‑expression network analysis, they identified gene modules whose expression correlated with genetic differentiation, revealing that defense‑related genes are up‑regulated in Pacific‑side populations while terpenoid metabolism genes are higher in Sea‑of‑Japan populations, indicating local adaptation via regulatory changes.

A biparental Vicia faba mapping population was screened under glasshouse conditions for resistance to a mixture of Fusarium avenaceum and Fusarium oxysporum, revealing several families with moderate to high resistance. Using the Vfaba_v2 Axiom SNP array, a high-density linkage map of 6,755 SNPs was constructed, enabling the identification of a major QTL on linkage group 4 associated with partial resistance to foot and root rot.

The study investigated unexpected leaf spot symptoms in Psa3‑resistant kiwifruit (Actinidia) germplasm, finding that Psa3 was detectable by qPCR and metabarcoding despite poor culturing. Metabarcoding revealed distinct bacterial community shifts in lesions versus healthy tissue, and whole‑genome sequencing identified diverse Pseudomonas spp. that, while not individually more pathogenic, could enhance Psa3 growth, suggesting pathogenic consortia on resistant hosts.