Keywords: decoding modules, transcriptome analysis, sampling protocols, nutrient stress

Latest 10 Papers

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

Transcriptome and hormone regulations shape drought stress-dependent Fusarium Head Blight susceptibility in different barley genotypes

Authors: Hoheneder, F., Steidele, C. E., Gigl, M., Dawid, C., Hueckelhoven, R.

Date: 2025-11-25 · Version: 1

DOI: 10.1101/2025.11.23.689882

Model Organism: Hordeum vulgare

Fusarium Head Blight drought stress barley hormone profiling transcriptome analysis

Aggressive nitrogen assimilation during exponential growth in Chlamydomonas reinhardtii

Authors: Tibule, M., Mallawarachchi, W., Oyateru, O., Ziaeian, M., Kim, M., Dharmasiri, H. N., Lee, J.-H.

Date: 2025-11-04 · Version: 1

DOI: 10.1101/2025.11.02.686124

Model Organism: Chlamydomonas reinhardtii

nitrogen use strategies Chlamydomonas reinhardtii nitrogen assimilation transcriptome analysis nitrogen storage

Evaluation of combined root exudate and rhizosphere microbiota sampling approaches to elucidate plant-soil-microbe interaction

Authors: Escudero-Martinez, C., Browne, E. Y., Schwalm, H., Santangeli, M., Brown, M., Brown, L., Roberts, D. M., Duff, A. M., Morris, J., Hedley, P. E., Thorpe, P., Abbott, J. C., Brennan, F., Bulgarelli, D., George, T. S., Oburger, E.

Date: 2025-10-24 · Version: 1

DOI: 10.1101/2025.10.23.683011

Model Organism: Hordeum vulgare

root exudates rhizosphere microbiota barley sampling protocols amplicon sequencing

Maternal Light and Temperature Modulate Seed Longevity in Arabidopsis

Authors: Mazhari Azad, S., Gill Villar, D., Yordan, E., Mestre Pluvinet, P., Forment, J., Tarraga Herrero, S., Gonzalez, C., Ninoles Rodenes, R., Gadea, J.

Date: 2025-10-19 · Version: 1

DOI: 10.1101/2025.10.19.683148

Model Organism: Arabidopsis thaliana

seed longevity maternal environment effect Arabidopsis thaliana temperature and light interaction transcriptome analysis

An evolutionary leap in plant reproduction: From archegonia and motile sperm to embryo sacs and pollen tubes

Authors: Chen, D., Tang, L., Wang, F., Zhang, M., Zheng, S., Xia, M., Wu, Q., Cao, M., Jia, P., Guo, Y., Chen, F., Peng, X., Hu, J., Sun, M., Li, H., Zhang, L., Yang, W.

Date: 2025-08-06 · Version: 1

DOI: 10.1101/2025.08.04.668594

Model Organism: Ginkgo biloba

Ginkgo biloba reproductive transition transcriptome analysis pollen tube guidance MYB98-CRP-ECS module

Physiological characterization in a somaclonal mutant for fruit shape derived from persimmon 'Hiratanenashi'

Authors: Horiuchi, A., Matsuzaki, R., Onoue, N., Ushijima, K., Kubo, Y., Akagi, T., Minamikawa, M. F.

Date: 2025-05-19 · Version: 1

DOI: 10.1101/2025.05.19.654774

Model Organism: Diospyros kaki

fruit shape persimmon (Diospyros kaki)elliptic Fourier descriptor transcriptome analysis WOX13

MYB93 regulates responses to environmental sulphur in Arabidopsis and tomato.

Authors: Cao, X., Wilkinson, H. B., Hutton, B., McMulkin, N., Graham, N. S., Etherington, R., Oliver, A. G., Clayton, C. M., Kaur, H., Coates, J. C.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.04.641362

Model Organism: Arabidopsis thaliana

sulfur nutrition AtMYB93 root development transcriptome analysis elemental analysis

Transcriptome differentiation in Cryptomeria japonica trees with different origins growing in the north and south of Japan

Authors: Ujino-Ihara, T., Uchiyama, K., Kanetani, S., Suyama, Y., Tsumura, Y.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.22.639673

Model Organism: Cryptomeria japonica

local adaptation transcriptome analysis weighted gene co‑expression network analysis (WGCNA)SNP differentiation defense response genes

Transcriptome responses of two Halophila stipulacea seagrass populations from pristine and impacted habitats, to single and combined thermal and excess nutrient stressors, reveal local adaptive features and core stress-response genes

Authors: Nguyen, H. M., Yaakov, B., Beca-Carretero, P., Procaccini, G., Wang, G., Dassanayake, M., Winters, G., Barak, S.

Date: 2025-01-27 · Version: 2

DOI: 10.1101/2025.01.21.634158

Model Organism: Halophila stipulacea

Halophila stipulacea thermal stress nutrient stress combined stressors transcriptome