Keywords: decoding modules, transcriptome profiling, DDM1, ascorbate, SWI3, Physcomitrium patens

Latest 23 Papers

Major alleles of CDCA7α shape CG-methylation in Arabidopsis thaliana

Authors: Bourguet, P., Lorkovic, Z. J., Casado, D. K., Bapteste, V., Cho, C. H., Igolkina, A., Lee, C.-R., Nordborg, M., Berger, F., Sasaki, E.

Date: 2025-09-07 · Version: 1

DOI: 10.1101/2025.09.03.673934

Model Organism: Arabidopsis thaliana

DNA methylation CG methylation (mCG)CDCA7 DDM1 local adaptation

DECREASE IN DNA METHYLATION 1-mediated epigenetic regulation maintains gene expression balance required for heterosis in Arabidopsis thaliana

Authors: Matsuo, K., Wu, R., Yonechi, H., Murakami, T., Takahashi, S., Kamio, A., Akter, M. A., Kamiya, Y., Nishimura, K., Matsuura, T., Tonosaki, K., Shimizu, M., Ikeda, Y., Kobayashi, H., Seki, M., Dennis, E. S., Fujimoto, R.

Date: 2025-08-26 · Version: 1

DOI: 10.1101/2025.08.21.671646

Model Organism: Arabidopsis thaliana

heterosis DNA methylation DDM1 Arabidopsis thaliana transcriptomics

Setaphyte VERY-LONG-CHAIN FATTY ACYL DESATURASES are desaturases that impact glycerolipid and sphingolipid metabolism

Authors: Duminil, P., Herrfurth, C., Haslam, T. M., Feussner, I.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.12.669868

Model Organism: Physcomitrium patens

desaturases very‑long‑chain fatty acids sphingolipids glycerolipids Physcomitrium patens

tRNA-Based Polycistronic CRISPR/Cas9 System Boosts Efficiency of Multi-Gene Deletion in the Moss Physcomitrella.

Authors: Kozgunova, E.

Date: 2025-08-01 · Version: 1

DOI: 10.1101/2025.07.29.667574

Model Organism: Physcomitrium patens

CRISPR/Cas9 polycistronic tRNA‑gRNA array large gene deletion multiplex editing Physcomitrium patens

Glycosylation-dependent sorting of an Arabinogalactan protein SLEEPING BEAUTY mediates apical tip growth and osmosensing in Physcomitrium patens

Authors: Yu, C.-Y., Maharjan, M., Liu, C.-H., Teh, O.-k.

Date: 2025-07-12 · Version: 1

DOI: 10.1101/2025.07.08.663806

Model Organism: Physcomitrium patens

Arabinogalactan protein cell wall rigidification glycosylation endocytic trafficking Physcomitrium patens

Molecular and Phenotypic Characterization of Telomere Repeat Binding (TRBs) Proteins in Moss: Evolutionary and Functional Perspectives

Authors: Kusova, A., Hola, M., Goffova Petrova, I., Rudolf, J., Zachova, D., Skalak, J., Hejatko, J., Klodova, B., Prerovska, T., Lycka, M., Sykorova, E., Bertrand, Y. J. K., Fajkus, J., Honys, D., Prochazkova Schrumpfova, P.

Date: 2025-06-17 · Version: 1

DOI: 10.1101/2025.06.11.659030

Model Organism: Physcomitrium patens

Telomere repeat binding proteins Physcomitrium patens knockout mutants telomere maintenance transcriptome profiling

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

MAX2-dependent signaling regulates the transition from 2D to 3D growth by suppressing cytokinin accumulation in Physcomitrium patens

Authors: Luo, Y., Hata, Y., Ohtsuka, J., Komatsu, A., Kojima, M., Sakakibara, H., Kyozuka, J.

Date: 2025-05-15 · Version: 1

DOI: 10.1101/2025.05.15.654175

Model Organism: Physcomitrium patens

MAX2-dependent signaling SMXL repressors cytokinin gametophore bud formation Physcomitrium patens

A moss N-Acetyltransferase-MAPK protein controls 2D to 3D developmental transition via acetylation and phosphorylation changes

Authors: de Luxan Hernandez, C., Ammitsoe, T. J., Kanne, J. V., Stanimirovic, S., Roux, M., Weeks, Z., Schutzbier, M., Dürnberger, G., Roitinger, E., Zhang, L., Spadiut, O., Ishikawa, M., Hasebe, M., Moody, L., Dagdas, Y., Rodriguez, E., Petersen, M.

Date: 2025-05-03 · Version: 1

DOI: 10.1101/2025.05.02.650421

Model Organism: Physcomitrium patens

post-translational modifications acetylation phosphorylation 2D-to-3D transition Physcomitrium patens

Expression levels of the Band-7 protein FLOTILLIN modulate salt tolerance, growth and development in the moss Physcomitrium patens

Authors: Csicsely, E., Noor, N., Mühlbauer, S., Kunz, H.-H., Schwenkert, S., Lehmann, M., Klingl, A., Top, O., Frank, W.

Date: 2025-04-17 · Version: 1

DOI: 10.1101/2025.04.14.648360

Model Organism: Physcomitrium patens

Flotillin (Band-7 protein)Physcomitrium patens chloroplast thylakoid membrane salinity tolerance ROS signaling

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