Keywords: decoding modules, transcriptome profiling, SNP array, SWI3, multi-omics, jasmonic acid

Latest 20 Papers

AMF primes immune genes against Puccinia hordei (Brown rust) in Hordeum vulgare but does not reduce pathogen burden

Authors: Moulton-Brown, C. E., Brzezinska, K., Orosa-Puente, B. E., Helgason, T.

Date: 2025-09-17 · Version: 1

DOI: 10.1101/2025.09.16.676302

Barley (Hordeum vulgare)Rhizophagus irregularis Puccinia hordei mycorrhiza‑induced resistance transcriptome profiling

Pioneer bark beetle attacks induce multifaceted localized defense responses in Norway spruce

Authors: Ramires, M. J., Netherer, S., Schebeck, M., Hummel, K., Schlosser, S., Razzazi-Fazeli, E., Ertl, R., Ahmad, M., Espinosa-Ruiz, A., Carrera, E., Arc, E., Martinez-Godoy, M. A., Banos, J., Caballero, T., Ledermann, T., van Loo, M., Trujillo-Moya, C.

Date: 2025-08-07 · Version: 1

DOI: 10.1101/2025.08.06.668443

Model Organism: Picea abies

Norway spruce bark beetle defense multi-omics jasmonic acid phenolic compounds

Virus-induced upregulation of mitochondrial metabolism modulates cytosolic redox balance and defense responses

Authors: Hou, L.-Y., Wu, C.-H., Lin, N.-S.

Date: 2025-07-06 · Version: 1

DOI: 10.1101/2025.07.05.663277

Model Organism: Nicotiana benthamiana

metabolic reprogramming Bamboo mosaic virus mitochondrial metabolism redox balance multi-omics

Multi-Omics Analysis of Heat Stress-Induced Memory in Arabidopsis

Authors: Thirumlaikumar, V. P. P., Yu, L., Arora, D., Mubeen, U., Wisniewski, A., Walther, D., Giavalisco, P., Alseekh, S., DL Nelson, A., Skirycz, A., Balazadeh, S.

Date: 2025-06-23 · Version: 1

DOI: 10.1101/2025.06.19.660594

Model Organism: Arabidopsis thaliana

heat stress acquired thermotolerance heat stress memory multi-omics Arabidopsis thaliana

Molecular and Phenotypic Characterization of Telomere Repeat Binding (TRBs) Proteins in Moss: Evolutionary and Functional Perspectives

Authors: Kusova, A., Hola, M., Goffova Petrova, I., Rudolf, J., Zachova, D., Skalak, J., Hejatko, J., Klodova, B., Prerovska, T., Lycka, M., Sykorova, E., Bertrand, Y. J. K., Fajkus, J., Honys, D., Prochazkova Schrumpfova, P.

Date: 2025-06-17 · Version: 1

DOI: 10.1101/2025.06.11.659030

Model Organism: Physcomitrium patens

Telomere repeat binding proteins Physcomitrium patens knockout mutants telomere maintenance transcriptome profiling

Systematic measurements of dose-dependent responses for combinatorial treatments of SA and JA led to the development of transcriptomic biomarkers

Authors: Tomita, A., Maeda, T., Mori-Moriyama, N., Nomura, Y., Kurita, Y., Kashima, M., Betsuyaku, S., Nagano, A. J.

Date: 2025-06-01 · Version: 1

DOI: 10.1101/2025.05.29.656841

Model Organism: Arabidopsis thaliana

salicylic acid jasmonic acid hormone crosstalk transcriptomic biomarkers Arabidopsis thaliana

The multiomics landscape of small peptides encoded by long non-coding RNA-derived sORFs in rice

Authors: Chen, Z., Lin, H., Wei, L., Wang, S., Peng, T., Song, W., Wang, D., Wu, Y., Wu, L., Wu, J., Wang, Y.

Date: 2025-04-02 · Version: 1

DOI: 10.1101/2025.04.01.646714

Model Organism: Oryza sativa

long non-coding RNAs small open reading frame peptides multi-omics ribosome profiling LC-MS/MS proteomics

Functional genetics of rice <em>PISTILLATA</em> genes unravels new roles and targets in flowering time, female fertility and parthenocarpy

Authors: Zamzam, M., Basak, R., Singh, S., Prakash, S., Peesapati, R., Khanday, I., Simonini, S., Grossniklaus, U., Vijayraghavan, U.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2023.08.05.552136

Model Organism: Oryza sativa

lodicule development PI paralogs (OsMADS2/OsMADS4)flowering time regulation genome-wide binding analysis transcriptome profiling

Identification of QTLs linked to partial resistance to foot and root rot caused by Fusarium avenaceum and Fusarium oxysporum in faba bean (Vicia faba)

Authors: Webb, A., Thomas, J. E., Davis, H., McAdam, S., Angra, D., O'Sullivan, D. M., Gostkiewicz, K., Capozzi, M., Wood, T. A.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.21.639454

Model Organism: Vicia faba

Vicia faba Fusarium foot and root rot QTL mapping SNP array disease resistance

Non-invasive imaging of salicylic and jasmonic acid activities in planta

Authors: Balakireva, A. V., Karataeva, T. A., Karampelias, M., Mitiouchkina, T. Y., Machacek, J., Shakhova, E. S., Perfilov, M. M., Belozerova, O. A., Palkina, K. A., Drazna, N., Vondrakova, Z., Fleiss, A., Fakhranurova, L. I., Markina, N. M., Morozov, V. V., Bugaeva, E. N., Delnova, G. M., Choob, V. V., Yampolsky, I. V., Petrasek, J., Mishin, A. S., Sarkisyan, K. S.

Date: 2025-02-17 · Version: 1

DOI: 10.1101/2025.02.17.636591

Model Organism: Multi-species

jasmonic acid salicylic acid autoluminescent reporter plant immunity Arabidopsis thaliana

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