Keywords: decoding modules, transcriptome profiling, SNP array, pathogen compatibility, Physcomitrium patens

Latest 21 Papers

Transcriptional responses of Solanum lycopersicum to three distinct parasites reveal host hubs and networks underlying parasitic successes

Authors: Truch, J., Jaouannet, M., Da Rocha, M., Kulhanek-Fontanille, E., Van Ghelder, C., Rancurel, C., Migliore, O., Pere, A., Jaubert, S., Coustau, C., Galiana, E., Favery, B.

Date: 2026-01-23 · Version: 1

DOI: 10.64898/2026.01.22.701158

Model Organism: Solanum lycopersicum

tomato pathogen compatibility transcriptomics co‑expression network Arabidopsis interactome

Insight into GABA shunt-associated aldehyde dehydrogenases (ALDH) and stress responses of ALDH superfamily in moss and barley

Authors: Kopecny, D. J., Belicek, J., Kopecna, M., Vigouroux, A., Koncitikova, R., von Schwartzenberg, K., Koncakova, K., Zeljkovic, S. C., Valarik, M., Muller, K., Kouril, R., Bergougnoux-Fojtik, V. H., Morera, S., Kopecny, D.

Date: 2026-01-14 · Version: 1

DOI: 10.64898/2026.01.13.699213

Model Organism: Multi-species

Aldehyde dehydrogenase GABA shunt Physcomitrium patens Hordeum vulgare Knockout mutants

Gene networks associated with early endosperm proliferation and basal endosperm layer differentiation in maize

Authors: Zhang, S., Ran, D., Ryu, C.-H., Li, G., Dannenhoffer, J. M., Wang, X., Drews, G. N., Yadegari, R.

Date: 2026-01-02 · Version: 1

DOI: 10.64898/2025.12.31.697219

Model Organism: Zea mays

maize endosperm development transcriptome profiling co‑expression network MYB-related transcription factors TOR signaling

The interplay between autophagy and the carbon/nitrogen ratio as key modulator of the auxin-dependent chloronema-caulonema developmental transition in Physcomitrium patens.

Authors: Pettinari, G., Liberatore, F., Mary, V., Theumer, M., Lascano, R., Saavedra, L. L.

Date: 2025-12-29 · Version: 1

DOI: 10.64898/2025.12.28.696759

Model Organism: Physcomitrium patens

autophagy auxin signaling carbon/nitrogen ratio Physcomitrium patens caulonemata development

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

CRISPR/Cas9 targeted genetic screening in Physcomitrella identifies novel cell division genes

Authors: Maekawa, K., van Gessel, N., Reski, R., Kozgunova, E.

Date: 2025-10-30 · Version: 2

DOI: 10.1101/2025.03.12.642918

Model Organism: Physcomitrium patens

plant cell division CRISPR/Cas9 screening co‑expression analysis Physcomitrium patens novel gene families

Unraveling synergistic and antagonistic effects of simultaneous versus single hypoxia-salt conditions in an evolutionary adapted plant species

Authors: Jordine, A., Alt, J., van Dongen, J. T., Fuertauer, L.

Date: 2025-10-10 · Version: 1

DOI: 10.1101/2025.10.09.681434

Model Organism: Salicornia europaea

combined hypoxia-salt stress Salicornia europaea transcriptome profiling synergistic vs antagonistic gene regulation carbohydrate and amino acid metabolism

A surface morphology-based inference method for the cell wall elasticity profile in tip-growing cells

Authors: Xu, R., Vidali, L., Wu, M.

Date: 2025-10-08 · Version: 3

DOI: 10.1101/2025.09.17.676748

Model Organism: Physcomitrium patens

cell wall elasticity tip‑growing cells surface triangulation mechanical modeling Physcomitrium patens

The complex molecular basis of enhanced stress resilience in extreme drought-tolerant Arabis grassland species

Authors: Khan, A. S., Zumkeller, S. M., Schmitz, G., Calic, I., Ali, T., Rahnamae, N., Hoerdemann, L., Abdelwahed, L., Szymanski, J. J., de Meaux, J.

Date: 2025-10-02 · Version: 1

DOI: 10.1101/2025.10.02.680103

Model Organism: Arabis nemorensis

drought resilience polygenic regulation transcriptome profiling small RNA (miR408)cis‑regulatory motifs

A century of breeding has preserved genetic variation, accumulated favorable alleles, and shaped the Rht gene portfolio in North American spring wheat

Authors: Gill, H. S., Blecha, S., Conley, E., Brault, C., Fiedler, J., Cook, J., Glover, K., Green, A., Read, A. C., Anderson, J. A.

Date: 2025-09-23 · Version: 1

DOI: 10.1101/2025.09.22.677111

Model Organism: Triticum aestivum

Hard red spring wheat genetic diversity Rht dwarfing genes SNP array KASP genotyping

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