Keywords: decoding modules, transcriptome reprogramming, CO2 enrichment, wheat, transcriptomics, GWAS, CRISPR/Cas9

Latest 91 Papers

Evaluating effects of elevated and accelerated NPQ relaxation on yield, physiology and transcription in soybean

Authors: Singh, D., de Souza, A. P., Doran, L., Hansen, J., Burgess, S. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.19.689310

Model Organism: Glycine max

photosynthetic efficiency elevated CO2 transgenic soybean VPZ construct transcriptomics

Mobility-enhanced virus vectors enable meristem genome editing in model and crop plants

Authors: Chiu, K. T., Higgs, H., Antunes, M. S., Lin, Y. T., McGarry, R. C.

Date: 2025-11-19 · Version: 1

DOI: 10.1101/2025.11.19.689159

Model Organism: Nicotiana benthamiana

CRISPR/Cas9 Tobacco rattle virus (TRV)RNA mobility factors meristem editing virus-mediated gRNA delivery

Developing a Molecular Toolkit to ENABLE all to apply CRISPR/Cas9-based Gene Editing in planta

Authors: Abate, B. A., Hahn, F., Chirivi, D., Betti, C., Fornara, F., Molloy, J. C., Krainer, K. M. C.

Date: 2025-11-09 · Version: 1

DOI: 10.1101/2025.11.09.687425

Model Organism: Multi-species

CRISPR/Cas9 plant gene editing low‑cost cloning Global South agriculture ENABLE(R) toolkit

Integrating image-based phenotyping and GWAS to map tolerance to Spittlebug nymphs in interspecific Urochloa grasses

Authors: Espitia-Buitrago, P., Perea, C., Mejia-Medina, J. C., Hernandez, L. M., Castiblanco, V., Ryan, C., De Vega, J. J., Jauregui, R. N.

Date: 2025-11-05 · Version: 1

DOI: 10.1101/2025.11.03.686394

Model Organism: Urochloa spp.

Urochloa spittlebug tolerance GWAS QTL image-based phenotyping

Methionine Triggers Metabolic, Transcriptional, and Epigenetic Reprogramming in Arabidopsis Leaves

Authors: Yerushalmy, Y., Dafni, M., Rabach, N., Hacham, Y., Amir, R.

Date: 2025-11-03 · Version: 1

DOI: 10.1101/2025.11.02.686087

Model Organism: Arabidopsis thaliana

methionine metabolism Arabidopsis thaliana DNA methylation transcriptome reprogramming stress hormone pathways

Development alters genotype-environment interactions and shapes adaptation in Arabidopsis

Authors: Lawrence-Paul, E. H., Janakiraman, J., Lawrence-Paul, M. R., Ben-Zeev, R., Xu, Y., Penn, A., Lasky, J. R.

Date: 2025-11-03 · Version: 2

DOI: 10.1101/2025.05.13.653704

Model Organism: Arabidopsis thaliana

vegetative phase change drought adaptation genotype-by-environment interaction GWAS developmental trade‑offs

Golden Promise-rapid, a fast-cycling barley genotype with high transformation efficiency

Authors: Buchmann, G., Haraldsson, E. B., Schüller, R., Rütjes, T., Walla, A. A., von Korff Schmising, M., Liu, S.

Date: 2025-10-31 · Version: 1

DOI: 10.1101/2025.10.31.685778

Model Organism: Hordeum vulgare

Golden Promise Ppd-H1 speed breeding CRISPR/Cas9 transformation efficiency

SWI3 regulates male sex determination in Marchantia polymorpha

Authors: Quiles, M. L., Raval, P. K., Rensing, S. A., Gould, S. B.

Date: 2025-10-30 · Version: 1

DOI: 10.1101/2025.10.29.685095

Model Organism: Marchantia polymorpha

SWI3 chromatin regulation Marchantia polymorpha gametangiophore development transcriptomics

Dual recognition of structurally unrelated mildew effectors underlies the broad-spectrum resistance of Pm3e in wheat

Authors: Kunz, L., Bernasconi, Z., Heuberger, M., Isaksson, J., Sotiropoulos, A. G., Stirnemann, U., Jigisha, J., Menardo, F., Wicker, T., Mueller, M. C., Keller, B.

Date: 2025-10-30 · Version: 2

DOI: 10.1101/2025.10.26.683672

Model Organism: Triticum aestivum (wheat)

broad-spectrum resistance NLR receptors Pm3 alleles powdery mildew effectors wheat

Engineering compact Physalis peruviana (goldenberry) to promote its potential as a global crop

Authors: Santo Domingo, M., Fitzgerald, B., Robitaille, G. M., Ramakrishnan, S., Swartwood, K., Karavolias, N., Schatz, M., Van Eck, J., Lippman, Z.

Date: 2025-10-24 · Version: 2

DOI: 10.1101/2025.08.15.670557

Model Organism: Physalis peruviana

Physalis peruviana Goldenberry CRISPR/Cas9 plant architecture compact ideotype

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