Keywords: decoding modules, transcriptome reprogramming, DDM1, transcriptome, phosphorylation

Latest 18 Papers

Charge reversal at the Lhcb2 N-terminus impairs phosphorylation and PSI-LHCII complex formation

Authors: Srivastava, A., Schiphorst, C., Berentsen, J., Verhoeven, D., Leeuwen, J. v., Longoni, F., Saccon, F., Wientjes, E.

Date: 2025-12-25 · Version: 1

DOI: 10.64898/2025.12.25.696481

Model Organism: Arabidopsis thaliana

state transitions Lhcb2 N‑terminal charge phosphorylation Arabidopsis thaliana thylakoid ultrastructure

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

Methionine Triggers Metabolic, Transcriptional, and Epigenetic Reprogramming in Arabidopsis Leaves

Authors: Yerushalmy, Y., Dafni, M., Rabach, N., Hacham, Y., Amir, R.

Date: 2025-11-03 · Version: 1

DOI: 10.1101/2025.11.02.686087

Model Organism: Arabidopsis thaliana

methionine metabolism Arabidopsis thaliana DNA methylation transcriptome reprogramming stress hormone pathways

Brassinosteroids promote sugar synthesis by inhibiting BIN2 phosphorylation of phosphoenolpyruvate carboxykinase

Authors: Zhang, H., Aizezi, Y., Bessho-Uehara, K., Chaudhary, A., Trinh, C. S., Xu, S.-L., Wang, Z.-Y.

Date: 2025-10-23 · Version: 1

DOI: 10.1101/2025.10.22.683954

Model Organism: Arabidopsis thaliana

brassinosteroids phosphoenolpyruvate carboxykinase phosphorylation gluconeogenesis Arabidopsis thaliana

Guard Cell-Enriched Phosphoproteome Reveals Phosphorylation of Endomembrane Proteins in Closed Stomata

Authors: Pullen, A.-M., Lyons, S., Mordant, A., Herring, L. E., Akpa, B., Rojas-Pierce, M.

Date: 2025-10-15 · Version: 1

DOI: 10.1101/2025.10.15.682613

Model Organism: General

stomatal aperture guard cells phosphorylation endomembrane trafficking proteomics

EPP1 is an ancestral component of the plant Common SymbiosisPathway

Authors: Rich, M. K., Vernie, T., Tiwari, M., Chauderon, L., Causse, J., Pellen, T., Boussaroque, A., Bianconi, M. E., Vandenbussche, M., Chambrier, P., Le Ru, A., Castel, B., Nagalla, S., Cullimore, J., Keller, J., Valdes-Lopez, O., Mbengue, M., Ane, J.-M., Delaux, P.-M.

Date: 2025-10-02 · Version: 1

DOI: 10.1101/2025.09.30.679610

Model Organism: Multi-species

EPP1 common symbiosis pathway arbuscular mycorrhizal fungi phosphorylation intracellular plant-microbe symbiosis

Major alleles of CDCA7α shape CG-methylation in Arabidopsis thaliana

Authors: Bourguet, P., Lorkovic, Z. J., Casado, D. K., Bapteste, V., Cho, C. H., Igolkina, A., Lee, C.-R., Nordborg, M., Berger, F., Sasaki, E.

Date: 2025-09-07 · Version: 1

DOI: 10.1101/2025.09.03.673934

Model Organism: Arabidopsis thaliana

DNA methylation CG methylation (mCG)CDCA7 DDM1 local adaptation

DECREASE IN DNA METHYLATION 1-mediated epigenetic regulation maintains gene expression balance required for heterosis in Arabidopsis thaliana

Authors: Matsuo, K., Wu, R., Yonechi, H., Murakami, T., Takahashi, S., Kamio, A., Akter, M. A., Kamiya, Y., Nishimura, K., Matsuura, T., Tonosaki, K., Shimizu, M., Ikeda, Y., Kobayashi, H., Seki, M., Dennis, E. S., Fujimoto, R.

Date: 2025-08-26 · Version: 1

DOI: 10.1101/2025.08.21.671646

Model Organism: Arabidopsis thaliana

heterosis DNA methylation DDM1 Arabidopsis thaliana transcriptomics

ABI5 Binding Proteins are substrates of key components in the ABA core signaling pathway

Authors: Finkelstein, R. R., Lynch, T., Erickson McNally, B. J., Losic, T., Lundquist, J.

Date: 2025-08-16 · Version: 2

DOI: 10.1101/2024.10.11.617944

Model Organism: Arabidopsis thaliana

ABA signaling ABI5‑Binding Proteins phosphorylation SnRK2 kinases protein stability

Tomato leaf transcriptomic changes promoted by long-term water scarcity stress can be largely prevented by a fungal-based biostimulant

Authors: Lopez-Serrano, L., Ferez-Gomez, A., Romero-Aranda, R., Jaime Fernandez, E., Leal Lopez, J., Fernandez Baroja, E., Almagro, G., Dolezal, K., Novak, O., Diaz, L., Bautista, R., Leon Morcillo, R. J., Pozueta Romero, J.

Date: 2025-06-28 · Version: 1

DOI: 10.1101/2025.06.26.661737

Model Organism: Solanum lycopersicum

water deficit Trichoderma harzianum culture filtrate tomato drought tolerance transcriptome

Page 1 of 2Next