Keywords: decoding modules, transcriptome reprogramming, structural variants, yield, phylogenetic analysis

Latest 27 Papers

Evolutionary origin and functional mechanism of Lhcx in the diatom photoprotection

Authors: Kumazawa, M., Akimoto, S., Takabayashi, A., Imaizumi, K., Tsuji, S., Hasegawa, H., Sakurai, A., Imamura, S., Ishikawa, N., Inoue-Kashino, N., Kashino, Y., Ifuku, K.

Date: 2025-09-07 · Version: 1

DOI: 10.1101/2025.09.06.674587

Model Organism: Chaetoceros gracilis

Lhcx1 non‑photochemical quenching diatom photoprotection phylogenetic analysis Chaetoceros gracilis

Ubiquitin-like SUMO protease expansion in rice (Oryza sativa)

Authors: Sue-ob, K., Zhang, C., Sharma, E., Bhosale, R., Sadanandom, A., Jones, A. R.

Date: 2025-08-25 · Version: 1

DOI: 10.1101/2025.08.20.671006

Model Organism: Oryza sativa

SUMOylation ULP proteases Oryza sativa phylogenetic analysis stress response

Bioherbicidal activity and host range of Teratoramularia rumicicola strain TR4 isolated from Rumex crispus in Japan

Authors: Izumi, M., Sato, T.

Date: 2025-08-07 · Version: 1

DOI: 10.1101/2025.08.06.668795

Model Organism: Rumex spp.

Rumex weeds Teratoramularia rumicicola bioherbicide host specificity phylogenetic analysis

Large-Scale Multigenome-Wide Study Predicts the Existence of Transmembrane Phosphotransfer Proteins in Plant MSP Signaling Pathway

Authors: Lomin, S. N., Brenner, W. G., Savelieva, E. M., Arkhipov, D. V., Romanov, G. A.

Date: 2025-07-31 · Version: 1

DOI: 10.1101/2025.07.28.667123

Model Organism: Arabidopsis thaliana

transmembrane HPt proteins multistep phosphorelay phylogenetic analysis molecular modeling plant signaling

Population-level super-pangenome reveals genome evolution and empowers precision breeding in watermelon

Authors: Sun, H., Zhang, J., Liao, S., Guo, S., Zhou, Z., Zhao, X., Wu, S., Zhao, J., Gong, G., Wang, J., Li, M., Yu, Y., Ren, Y., Tian, S., Li, S., Zhang, H., Hammar, S. A., McGregor, C., Jarret, R., Wechter, P., Branham, S. E., Kousik, C., Levi, A., Grumet, R., Xu, Y., Fei, Z.

Date: 2025-07-27 · Version: 1

DOI: 10.1101/2025.07.25.666869

Model Organism: Citrullus lanatus (watermelon)

watermelon super-pangenome structural variants genome-wide association study copy number variation genomic prediction

An NLP-inherited motif confers broad DNA-binding specificity to NIN in root nodule symbiosis

Authors: Nosaki, S., Noda, M., Onoda, H., Ito, M., Suzaki, T.

Date: 2025-07-23 · Version: 1

DOI: 10.1101/2025.07.20.665785

Model Organism: Lotus japonicus

NODULE INCEPTION FR motif DNA-binding specificity root nodule symbiosis phylogenetic analysis

Graph pangenome reveals structural variation dynamics during cucumber breeding

Authors: Zhao, X., Yu, J., Zhang, J., Sun, H., Wu, S., Zhao, J., Zhou, Y., Hammar, S., Lin, Y.-C., Zhang, Z., Huang, S., Dymerski, R., Chen, F., Weng, Y., Grumet, R., Xu, Y., Fei, Z.

Date: 2025-07-21 · Version: 1

DOI: 10.1101/2025.07.17.665377

Model Organism: Cucumis sativus

structural variants graph pangenome cucumber domestication genomic prediction purifying selection

Evolutionary origin and functional diversification of plant GBF1-type ARF guanine-nucleotide exchange factors

Authors: Singh, M. K., Lauster, T., Huhn, K., Richter, S., Kientz, M., Neher, R. A., Juergens, G.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657657

Model Organism: Arabidopsis thaliana

GBF1-type ARF‑GEF phylogenetic analysis ortho‑synteny polar recycling yeast two‑hybrid

SnRK1.1 Coordinates Organ-Specific Growth-Defense Programs via Transcriptomic Rewiring in Arabidopsis thaliana

Authors: Kalachova, T., Muller, K., Lacek, J., Pree, S., Antonova, A., Bondarenko, O., Burketova, L., Retzer, K., Weckwerth, W.

Date: 2025-04-29 · Version: 1

DOI: 10.1101/2025.04.25.650715

Model Organism: Arabidopsis thaliana

SnRK1 KIN10 transcriptome reprogramming plant immunity tissue-specific signaling

Rapid population flux in bacterial spot xanthomonads during a transition in dominance between two genotypes in consecutive tomato production seasons and identification of a new species Xanthomonas oklahomensis sp. nov.

Authors: Johnson, B., Subedi, A., Damicone, J., Goss, E., Jones, J. B., Jibrin, M. O.

Date: 2025-04-16 · Version: 1

DOI: 10.1101/2025.04.13.648550

Model Organism: Solanum lycopersicum

bacterial spot Xanthomonas euvesicatoria population shift phylogenetic analysis copper resistance

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