Keywords: decoding modules, transcriptomic analysis, structural variation, Marchantia polymorpha

Latest 34 Papers

Molecular basis of delayed leaf senescence induced by short-term treatment with low phosphate in rice

Authors: Martin-Cardoso, H., Bundo, M., Garcia-Molina, A., San Segundo, B.

Date: 2026-01-24 · Version: 1

DOI: 10.64898/2026.01.23.701354

phosphate deficiency leaf senescence Oryza sativa CRISPR/Cas9 transcriptomic analysis

Initiation of asexual reproduction by the AP2/ERF gene GEMMIFER in Marchantia polymorpha

Authors: Takahashi, G., Yamaya, S., Romani, F., Bonter, I., Ishizaki, K., Shimamura, M., Kiyosue, T., Haseloff, J., Hirakawa, Y.

Date: 2026-01-16 · Version: 1

DOI: 10.64898/2026.01.16.699827

Model Organism: Marchantia polymorpha

MpGMFR AP2/ERF gemmae Marchantia polymorpha asexual reproduction

A dual genomic-epigenomic map of clonal evolution in grapevine

Authors: Callipo, P., Robinson, H., Schmidt, M., Voss-Fels, K. P.

Date: 2026-01-09 · Version: 1

DOI: 10.64898/2026.01.09.698625

Model Organism: Vitis vinifera

Vitis vinifera clonal genetic variation structural variation CG DNA methylation Oxford Nanopore sequencing

Chromosome-scale Solanum pennellii and Solanum cheesmaniae genome assemblies reveal structural variants, repeat content and recombination barriers of the tomato clade

Authors: van Rengs, W., Fuentes, R. R., Zangishei, Z., Primetis, E., Wang, Y., Fernandes, J., Susanto, T., Lian, Q., Effgen, S., Huettel, B., Alseekh, S., Usadel, B., Underwood, C. J.

Date: 2025-12-20 · Version: 1

DOI: 10.64898/2025.12.19.695418

Model Organism: Solanum lycopersicum

chromosome-scale genome assembly Solanum pennellii Solanum cheesmaniae structural variation recombination landscape

Genomic Structural Variation Underlies Cell-Type-Specific Betacyanin Variegation in Chenopodium quinoa

Authors: Zhang, Z., Wang, Y., Hu, X., Yu, T., Feng, Y., Zhang, J., Zhang, T., Feng, G., Zhang, H.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694152

Model Organism: Chenopodium quinoa

betacyanin biosynthesis CYP76AD epidermal bladder cells structural variation subgenome specialization

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

A SABATH family enzyme regulates development via the gibberellin-related pathway in the liverwort Marchantia polymorpha

Authors: Kawamura, S., Shimokawa, E., Ito, M., Nakamura, I., Kanazawa, T., Iwano, M., Sun, R., Yoshitake, Y., Yamaoka, S., Yamaguchi, S., Ueda, T., Kato, M., Kohchi, T.

Date: 2025-12-13 · Version: 1

DOI: 10.64898/2025.12.11.693594

Model Organism: Marchantia polymorpha

SABATH methyltransferases Marchantia polymorpha gibberellin metabolism far‑red light response developmental regulation

Carbon availability acts via cytokinins to promote gemma cup formation in Marchantia polymorpha

Authors: Humphreys, J. L., Fisher, T. J., Perez, T. A., Flores-Sandoval, E., Silvestri, A., Rubio-Somoza, I., Barbier, F. F.

Date: 2025-12-09 · Version: 1

DOI: 10.64898/2025.12.08.692956

Model Organism: Marchantia polymorpha

gemma cup formation carbon availability cytokinin signaling Marchantia polymorpha MpGCAM1/MpSTG transcription factors

Chromosome-scale haplotype genome assemblies for the Australian mango 'Kensington Pride' 1 and a wild relative, Mangifera laurina, provide insights into anthracnose-resistance and volatile 2 compound biosynthesis genes

Authors: Wijesundara, U. K., Furtado, A., Masouleh, A., Dillon, N. L., Smyth, H., Henry, R. J.

Date: 2025-11-27 · Version: 1

DOI: 10.1101/2025.11.24.690335

Model Organism: Mangifera indica

Mangifera indica PacBio HiFi genome assembly anthracnose resistance structural variation carotenoid and terpenoid biosynthesis

MpNPR modulates lineage-specific oil body development and defence against gastropod herbivory in Marchantia polymorpha

Authors: Espinosa-Cores, L., Michavila, S., Gonzalez-Zuloaga, M., Solano, R., Gimenez-Ibanez, S.

Date: 2025-11-17 · Version: 1

DOI: 10.1101/2025.11.17.688000

Model Organism: Marchantia polymorpha

Marchantia polymorpha NPR signaling oil body formation MpERF13 gastropod herbivory

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