Keywords: decoding modules, transcriptomic analysis, structural variation, transcriptomics, SOC1, tomato

Latest 64 Papers

Chromosome-scale Solanum pennellii and Solanum cheesmaniae genome assemblies reveal structural variants, repeat content and recombination barriers of the tomato clade

Authors: van Rengs, W., Fuentes, R. R., Zangishei, Z., Primetis, E., Wang, Y., Fernandes, J., Susanto, T., Lian, Q., Effgen, S., Huettel, B., Alseekh, S., Usadel, B., Underwood, C. J.

Date: 2025-12-20 · Version: 1

DOI: 10.64898/2025.12.19.695418

Model Organism: Solanum lycopersicum

chromosome-scale genome assembly Solanum pennellii Solanum cheesmaniae structural variation recombination landscape

Quantitative trait locus mapping of root exudate metabolome in a Solanum lycopersicum Moneymaker x S. pimpinellifolium RIL population and their putative links to rhizosphere microbiome

Authors: Kim, B., Kramer, G., Leite, M. F. A., Snoek, B. L., Zancarini, A., Bouwmeester, H.

Date: 2025-12-17 · Version: 1

DOI: 10.64898/2025.12.17.693946

Model Organism: Solanum lycopersicum

root exudates untargeted metabolomics quantitative trait loci tomato plant‑microbe interactions

Genomic Structural Variation Underlies Cell-Type-Specific Betacyanin Variegation in Chenopodium quinoa

Authors: Zhang, Z., Wang, Y., Hu, X., Yu, T., Feng, Y., Zhang, J., Zhang, T., Feng, G., Zhang, H.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694152

Model Organism: Chenopodium quinoa

betacyanin biosynthesis CYP76AD epidermal bladder cells structural variation subgenome specialization

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

A photoprotection dial maps holistic light-stress response in diatoms

Authors: Croteau, D., Jaubert, M., Quemar, T., Falciatore, A., Maes, A., Bailleul, B.

Date: 2025-12-15 · Version: 1

DOI: 10.64898/2025.12.11.693581

Model Organism: Phaeodactylum tricornutum

non-photochemical quenching Phaeodactylum tricornutum high-light stress transcriptomics photosynthetic regulation

Molecular response of the diatom Coscinodiscus granii and its co-occurring dictyochophyte during Lagenisma coscinodisci parasite infection

Authors: Orvain, C., Bertrand, L., Moussy, A., Porcel, B. M., Vallet, M., Carradec, Q., Thurotte, A.

Date: 2025-12-12 · Version: 2

DOI: 10.1101/2025.10.10.681168

Model Organism: Coscinodiscus granii

diatom‑parasite interactions oomycete effectors Coscinodiscus granii transcriptomics metabolomics

Chromosome-scale haplotype genome assemblies for the Australian mango 'Kensington Pride' 1 and a wild relative, Mangifera laurina, provide insights into anthracnose-resistance and volatile 2 compound biosynthesis genes

Authors: Wijesundara, U. K., Furtado, A., Masouleh, A., Dillon, N. L., Smyth, H., Henry, R. J.

Date: 2025-11-27 · Version: 1

DOI: 10.1101/2025.11.24.690335

Model Organism: Mangifera indica

Mangifera indica PacBio HiFi genome assembly anthracnose resistance structural variation carotenoid and terpenoid biosynthesis

Evaluating effects of elevated and accelerated NPQ relaxation on yield, physiology and transcription in soybean

Authors: Singh, D., de Souza, A. P., Doran, L., Hansen, J., Burgess, S. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.19.689310

Model Organism: Glycine max

photosynthetic efficiency elevated CO2 transgenic soybean VPZ construct transcriptomics

Key molecular and cellular events of table olive fruit abscission zone formation during natural maturation and after ethephon treatment

Authors: Wang, M., Santos, E., Eagle, S., Chernikova, A., Zhang, S., Tran, P., Marino, G., Jernstedt, J., Niederholzer, F., Wheeler-Dykes, B., Wilkop, T., Ferguson, L., Drakakaki, G.

Date: 2025-11-12 · Version: 1

DOI: 10.1101/2025.11.10.687704

Model Organism: Olea europaea

abscission zone Olea europaea transcriptomic analysis cell wall remodeling alkalinization

Thermotolerant pollen tube growth is controlled by RALF signaling.

Authors: Althiab Almasaud, R., Ouonkap Yimga, S. V., Ingram, J., Oseguera, Y., Alkassem Alosman, M., Travis, C., Henry, A., Medina, M., Oulhen, N., Wessel, G. M., Delong, A., Pease, J., DaSilva, N., Johnson, M.

Date: 2025-11-12 · Version: 2

DOI: 10.1101/2025.10.25.684177

Model Organism: Solanum lycopersicum

thermotolerant pollen tube growth heat stress RALF signaling pollen tube integrity tomato

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