Keywords: decoding modules, transcriptomic analysis, transcriptomics, structural variation, barley

Latest 54 Papers

Genomic Structural Variation Underlies Cell-Type-Specific Betacyanin Variegation in Chenopodium quinoa

Authors: Zhang, Z., Wang, Y., Hu, X., Yu, T., Feng, Y., Zhang, J., Zhang, T., Feng, G., Zhang, H.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694152

Model Organism: Chenopodium quinoa

betacyanin biosynthesis CYP76AD epidermal bladder cells structural variation subgenome specialization

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

A photoprotection dial maps holistic light-stress response in diatoms

Authors: Croteau, D., Jaubert, M., Quemar, T., Falciatore, A., Maes, A., Bailleul, B.

Date: 2025-12-15 · Version: 1

DOI: 10.64898/2025.12.11.693581

Model Organism: Phaeodactylum tricornutum

non-photochemical quenching Phaeodactylum tricornutum high-light stress transcriptomics photosynthetic regulation

Molecular response of the diatom Coscinodiscus granii and its co-occurring dictyochophyte during Lagenisma coscinodisci parasite infection

Authors: Orvain, C., Bertrand, L., Moussy, A., Porcel, B. M., Vallet, M., Carradec, Q., Thurotte, A.

Date: 2025-12-12 · Version: 2

DOI: 10.1101/2025.10.10.681168

Model Organism: Coscinodiscus granii

diatom‑parasite interactions oomycete effectors Coscinodiscus granii transcriptomics metabolomics

Chromosome-scale haplotype genome assemblies for the Australian mango 'Kensington Pride' 1 and a wild relative, Mangifera laurina, provide insights into anthracnose-resistance and volatile 2 compound biosynthesis genes

Authors: Wijesundara, U. K., Furtado, A., Masouleh, A., Dillon, N. L., Smyth, H., Henry, R. J.

Date: 2025-11-27 · Version: 1

DOI: 10.1101/2025.11.24.690335

Model Organism: Mangifera indica

Mangifera indica PacBio HiFi genome assembly anthracnose resistance structural variation carotenoid and terpenoid biosynthesis

Transcriptome and hormone regulations shape drought stress-dependent Fusarium Head Blight susceptibility in different barley genotypes

Authors: Hoheneder, F., Steidele, C. E., Gigl, M., Dawid, C., Hueckelhoven, R.

Date: 2025-11-25 · Version: 1

DOI: 10.1101/2025.11.23.689882

Model Organism: Hordeum vulgare

Fusarium Head Blight drought stress barley hormone profiling transcriptome analysis

Evaluating effects of elevated and accelerated NPQ relaxation on yield, physiology and transcription in soybean

Authors: Singh, D., de Souza, A. P., Doran, L., Hansen, J., Burgess, S. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.19.689310

Model Organism: Glycine max

photosynthetic efficiency elevated CO2 transgenic soybean VPZ construct transcriptomics

Key molecular and cellular events of table olive fruit abscission zone formation during natural maturation and after ethephon treatment

Authors: Wang, M., Santos, E., Eagle, S., Chernikova, A., Zhang, S., Tran, P., Marino, G., Jernstedt, J., Niederholzer, F., Wheeler-Dykes, B., Wilkop, T., Ferguson, L., Drakakaki, G.

Date: 2025-11-12 · Version: 1

DOI: 10.1101/2025.11.10.687704

Model Organism: Olea europaea

abscission zone Olea europaea transcriptomic analysis cell wall remodeling alkalinization

FLOWERING LOCUS T1 is a pleiotropic regulator of reproductive development, plant longevity, and source-sink relations in barley

Authors: Helmsorig, G., Lan, T., Haraldsson, E. B., Ruetjes, T., Westhoff, P., Weber, K., Kumlehn, J., Hensel, G., Simon, R., von Korff, M.

Date: 2025-11-10 · Version: 1

DOI: 10.1101/2025.11.07.687273

Model Organism: Hordeum vulgare (barley)

FT1 source-sink interactions barley inflorescence development plant longevity

SWI3 regulates male sex determination in Marchantia polymorpha

Authors: Quiles, M. L., Raval, P. K., Rensing, S. A., Gould, S. B.

Date: 2025-10-30 · Version: 1

DOI: 10.1101/2025.10.29.685095

Model Organism: Marchantia polymorpha

SWI3 chromatin regulation Marchantia polymorpha gametangiophore development transcriptomics

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