Keywords: decoding modules, transcriptomic reprogramming, actin depolymerization factors, DNA methylation

Latest 22 Papers

DECREASE IN DNA METHYLATION 1-mediated epigenetic regulation maintains gene expression balance required for heterosis in Arabidopsis thaliana

Authors: Matsuo, K., Wu, R., Yonechi, H., Murakami, T., Takahashi, S., Kamio, A., Akter, M. A., Kamiya, Y., Nishimura, K., Matsuura, T., Tonosaki, K., Shimizu, M., Ikeda, Y., Kobayashi, H., Seki, M., Dennis, E. S., Fujimoto, R.

Date: 2025-08-26 · Version: 1

DOI: 10.1101/2025.08.21.671646

Model Organism: Arabidopsis thaliana

heterosis DNA methylation DDM1 Arabidopsis thaliana transcriptomics

Esca Disease triggers local transcriptomic response and systemic DNA methylation changes in grapevine

Authors: Berger, M. M. J., Garcia, V., Rubio, B., Bortolami, G., Gambetta, G., Delmas, C. E. L., Gallusci, P.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.11.669596

Model Organism: Vitis vinifera

Esca Vitis vinifera metabolite profiling RNA‑seq DNA methylation

The Arabidopsis GyraseB3 contributes to transposon silencing by promoting histone deacetylation

Authors: Gy, I., Beaubiat, S., Bouche, N.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.11.669681

Model Organism: Arabidopsis thaliana

DNA methylation histone demethylase IBM1 GyrB3 transposable element silencing histone deacetylase HDA6

Role of methylation and siRNA on differential allelic expression in a hybrid of distantly related citrus species.

Authors: DIOP, K., Gibert, A., Llauro, C., Froelicher, Y., Hufnagel, B., Picault, N., Pontvianne, F.

Date: 2025-07-27 · Version: 1

DOI: 10.1101/2025.07.25.666733

Model Organism: Citrus spp.

DNA methylation CHH methylation RNA-directed DNA methylation (RdDM)small RNAs allele-specific expression

Actin Depolymerization Factors (ADFs) Moonlighting: Nuclear Immune Regulation by Interacting with WRKY Transcription Factors and Shaping the Transcriptome

Authors: Li, P., Kelley, B., Li, Z., Procter, B., Corrion, A., Xie, X., Sheick, R., Lu, Y.-j., Nomoto, M., Wei, C.-i., Tada, Y., He, S.-Y., Xiao, S., Day, B.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.29.651294

Model Organism: Arabidopsis thaliana

actin depolymerization factors nuclear transcription regulation WRKY transcription factors plant immunity Arabidopsis thaliana

Analysing the Role of KIN10 in Directional Root Growth Regulation in Arabidopsis thaliana

Authors: Retzer, K., Garcia-Gonzalez, J., Muller, K., Lacek, J., Pree, S., Friedl, N., Weckwerth, W.

Date: 2025-04-29 · Version: 1

DOI: 10.1101/2025.04.25.650732

Model Organism: Arabidopsis thaliana

SnRK1 KIN10 carbon availability root growth regulation hormone signaling transcriptomic reprogramming

Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana

Authors: Zhong, Z., Bailey, M., Kim, Y.-I., Pesaran-Afsharyan, N., Parker, B., Arathoon, L., Li, X., Rundle, C. A., Behrens, A., Nedialkova, D. D., Slavov, G., Hassani-Pak, K., Lilley, K. S., Theodoulou, F. L., Mott, R.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2025.01.08.631880

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana codon usage gene expression DNA methylation ribosome profiling

Impaired methyl recycling induces substantial shifts in sulfur utilization in Arabidopsis

Authors: Tremblay, B. J.-M., Adeel, S. A., Saechao, M., Dong, Y., Andrianasolo, E., Steele, J. M., Traa, A., Yogadasan, N., Waduwara-Jayabahu, I., Katzenback, B. A., Hell, R., Wirtz, M., Moffatt, B. A.

Date: 2025-03-13 · Version: 1

DOI: 10.1101/2025.03.09.642221

Model Organism: General

sulfur metabolism methylthioadenosine nucleosidase methionine/S‑adenosylmethionine biosynthesis DNA methylation reproductive development

Arabidopsis REM transcription factors and GDE1 shape the DNA methylation landscape through the recruitment of RNA Polymerase IV transcription complexes.

Authors: Wu, Z., Xue, Y., Wang, S., Shih, Y.-H., Zhong, Z., Feng, S., Draper, J., Lu, A., Sha, J., Li, L., Wohlschlegel, J., Wu, K., Jacobsen, S. E.

Date: 2025-02-23 · Version: 1

DOI: 10.1101/2025.02.21.639493

Model Organism: Arabidopsis thaliana

DNA methylation 24‑nt siRNA REM transcription factors RNA polymerase IV Arabidopsis

Transcription factors instruct DNA methylation patterns in plant reproductive tissues

Authors: Xu, G., Chen, Y., Wang, F., Li, E., Law, J.

Date: 2025-02-23 · Version: 1

DOI: 10.1101/2025.02.21.639562

Model Organism: Arabidopsis thaliana

DNA methylation RNA‑directed DNA methylation (RdDM)REPRODUCTIVE MERISTEM transcription factors sex‑specific epigenetic regulation Arabidopsis thaliana

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