Keywords: decoding modules, transcriptomic reprogramming, spatial transcriptomics, S-nitrosylation, tomato

Latest 31 Papers

TGA family of transcription factors are nitric oxide sensors in the root stem cell niche

Authors: Fernandez-Espinosa, M. G., Gomez-Jimenez, S., Mata-Perez, C., Sanchez-Corrionero, A., Song, J., de Luis Balaguer, M. A., Sozzani, R., Gutsche, N., Zachgo, S., Leene, J. V., De Jaeger, G., Spoel, S. H., Lorenzo, O.

Date: 2025-10-15 · Version: 1

DOI: 10.1101/2025.10.14.682262

Model Organism: Arabidopsis thaliana

nitric oxide S-nitrosylation PERIANTHIA (PAN)TGA transcription factors root stem cell niche

Discovery of tomato UDP-glucosyltransferases involved in bioactive jasmonate homeostasis using limited proteolysis-coupled mass spectrometry

Authors: Venegas-Molina, J., Mohnike, L., Selma Garcia, S., Janssens, H., Colembie, R., Kimpe, I., Jaramillo-Madrid, A. C., Lacchini, E., Winne, J. M., Van Damme, P., Feussner, I., Goossens, A., Sola, K.

Date: 2025-10-15 · Version: 1

DOI: 10.1101/2025.10.15.682356

Model Organism: Solanum lycopersicum

jasmonic acid limited proteolysis‑coupled mass spectrometry UDP‑glucuronosyltransferase JA catabolism tomato

A Key Role for S-Nitrosylation in Immune Regulation and Development in the Liverwort Marchantia polymorpha

Authors: Goodrich, J.

Date: 2025-09-30 · Version: 1

DOI: 10.1101/2025.09.29.679193

Model Organism: Marchantia polymorpha

Nitric oxide S-nitrosylation GSNOR Marchantia polymorpha plant immunity

Mammalian growth-regulating factors enhance regeneration of recalcitrant transgenic tomato accessions

Authors: Garchery, C., Benejam, J., Grau, A., Gricourt, J., Pelpoir, E., Causse, M.

Date: 2025-09-29 · Version: 1

DOI: 10.1101/2025.09.25.678568

Model Organism: Solanum lycopersicum

CRISPR-Cas9 plant regeneration mammalian growth factors cytokines tomato

SlATG8f enhances tomato thermotolerance and fruit quality via autophagy and HS pathways

Authors: Cheng, q., Xu, w., wen, c., He, Z., Song, L.

Date: 2025-09-25 · Version: 1

DOI: 10.1101/2025.09.23.678159

Model Organism: Solanum lycopersicum

SlATG8f autophagy high-temperature stress tomato fruit quality

Repressed expression of nucleoporins and importins impairs plant defense against an infectious noncoding RNA

Authors: Wang, Y., Fang, Y., Merritt, B. A., Liu, B., Gu, Y., Mou, Z., Wang, Y., Hao, J.

Date: 2025-09-21 · Version: 1

DOI: 10.1101/2025.09.19.677415

Model Organism: Solanum lycopersicum

viroid nucleoporins NPR1 salicylic acid analog tomato

Pseudomonas aeruginosa SPT08, a tomato endophyte, improves plant growth and controls bacterial wilt in tomato

Authors: Giri, S. J., Rana, R., Sharma, P. L., Begum, S., Dutta, L., Kalita, S., Bhuyan, S., Jain, M., Agarwala, N., Patil, P. B., Ray, S. K.

Date: 2025-08-20 · Version: 1

DOI: 10.1101/2025.08.17.670768

Model Organism: Solanum lycopersicum

Pseudomonas aeruginosa tomato bacterial wilt endophyte plant growth promotion

Spatial transcriptomics identifies distinct domains regulating yield-related traits of the wheat ear

Authors: Qu, Y., Tan, C., Yang, L., Pasquariello, M., Alabdullah, A. K., Sun, S., Iqbal, M., Salamon, J., Boden, S.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.12.670006

Model Organism: Triticum aestivum

spikelet development spatial transcriptomics wheat inflorescence RAMOSA2 ALOG1

Plant-Compatible Xenium In Situ Sequencing: Optimised Protocol for Spatial Transcriptomics in Medicago truncatula Roots and Nodules

Authors: Jhu, M.-Y., Heffer, J., Deamer, A., Moraes, T. A., Piskorz, A. M., Xia, C.

Date: 2025-07-25 · Version: 1

DOI: 10.1101/2025.07.22.663073

Model Organism: Medicago truncatula

spatial transcriptomics Xenium in situ sequencing Medicago truncatula root nodules autofluorescence mitigation

Introducing furanocoumarin biosynthetic genes in tomato results in coumarins accumulation and impacted growth

Authors: Bouille, A., Villard, C., Galati, G., Roumani, M., Fauvet, A., Grosjean, J., Hoengenaert, L., Boerjan, W., Ralph, J., Hilliou, F., Robin, C., Hehn, A., Larbat, R.

Date: 2025-07-08 · Version: 1

DOI: 10.1101/2025.07.07.663522

Model Organism: Solanum lycopersicum

metabolic engineering linear furanocoumarin pathway coumarins tomato metabolomics

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