Keywords: decoding modules, transposable elements, CO2-fixing enzyme, DDM1

Latest 10 Papers

Universal modules for decoding amplitude and frequency of Ca2+ signals in plants

Authors: Vergara-Valladares, F., Rubio-Melendez, M. E., Charpentier, M., Michard, E., Dreyer, I.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.13.694100

Model Organism: General

calcium signaling EF‑hand Ca2+ binding protein decoding modules plant calcium sensors signal amplitude and frequency

DNA methylation mediates transcriptional stability and transposon-driven trans-regulation under drought in wheat

Authors: Reynolds, I. J., Barratt, L. J., Harper, A. L.

Date: 2025-12-05 · Version: 1

DOI: 10.64898/2025.12.04.692301

Model Organism: Triticum aestivum

drought stress DNA methylation Triticum aestivum ROS1a demethylase transposable elements

Rubisco Dark Inhibition in Angiosperms Shows a Complex Distribution Pattern

Authors: Nehls-Ramos, C., Carmo-Silva, E., Orr, D. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.20.689527

Model Organism: Multi-species

Rubisco dark inhibition flowering plants phylogenetic analysis photosynthetic regulation CO2-fixing enzyme

DNA methylome responses to biotic and abiotic stress in Arabidopsis thaliana: A multi-study analysis

Authors: Behl, R., Gallo-Franco, J. J., Hazarika, R. R., Zhang, Z., Wilming, F., Schnitzler, J.-P., Lindermayr, C., Johannes, F.

Date: 2025-10-20 · Version: 1

DOI: 10.1101/2025.10.20.682861

Model Organism: Arabidopsis thaliana

DNA methylation stress response Arabidopsis thaliana transposable elements epimutations

High-Quality Draft Genome Assemblies and Comparative Genomics of Three Bouteloua Species (Poaceae: Chloridoideae)

Authors: Ganesan, M. A., Hale, C. O., Romay, M. C., Buckler, E. S., Stitzer, M. C.

Date: 2025-10-17 · Version: 1

DOI: 10.1101/2025.10.15.682643

Model Organism: Multi-species

Bouteloua PacBio HiFi genome assembly polyploidy transposable elements

Major alleles of CDCA7α shape CG-methylation in Arabidopsis thaliana

Authors: Bourguet, P., Lorkovic, Z. J., Casado, D. K., Bapteste, V., Cho, C. H., Igolkina, A., Lee, C.-R., Nordborg, M., Berger, F., Sasaki, E.

Date: 2025-09-07 · Version: 1

DOI: 10.1101/2025.09.03.673934

Model Organism: Arabidopsis thaliana

DNA methylation CG methylation (mCG)CDCA7 DDM1 local adaptation

DECREASE IN DNA METHYLATION 1-mediated epigenetic regulation maintains gene expression balance required for heterosis in Arabidopsis thaliana

Authors: Matsuo, K., Wu, R., Yonechi, H., Murakami, T., Takahashi, S., Kamio, A., Akter, M. A., Kamiya, Y., Nishimura, K., Matsuura, T., Tonosaki, K., Shimizu, M., Ikeda, Y., Kobayashi, H., Seki, M., Dennis, E. S., Fujimoto, R.

Date: 2025-08-26 · Version: 1

DOI: 10.1101/2025.08.21.671646

Model Organism: Arabidopsis thaliana

heterosis DNA methylation DDM1 Arabidopsis thaliana transcriptomics

Somatic mobility of transposons is explosive and shaped by distinct integration biases in Arabidopsis thaliana

Authors: Ambreen, H., Leduque, B., Quadrana, L., Slotkin, R. K., Bousios, A., Nuetzmann, H.-W.

Date: 2025-07-18 · Version: 1

DOI: 10.1101/2025.07.14.664700

Model Organism: Arabidopsis thaliana

transposable elements somatic transposition Arabidopsis thaliana chromatin integration bias epigenetic mutants

Loss of RdDM-independent CHH methylation is sufficient for disruption of chromosome-specific rRNA gene silencing

Authors: McKinlay, A., Enganti, R., Puppala, N. V., Saradadevi, G. P., Blevins, T., Mohannath, G.

Date: 2025-02-20 · Version: 3

DOI: 10.1101/2023.02.03.526984

Model Organism: Arabidopsis thaliana

CHH methylation rRNA gene silencing Nucleolus organizer region (NOR)CMT2 DDM1

Atypical epigenetic and small RNA control of degenerated transposons and their fragments in clonally reproducing Spirodela polyrhiza

Authors: Dombey, R., Buendia-Avila, D., Barragan-Borrero, V., Diezma-Navas, L., Ponce-Mane, A., Vargas-Guerrero, J. M., Elias, R., Mari-Ordonez, A.

Date: 2025-01-27 · Version: 2

DOI: 10.1101/2024.04.03.587901

Model Organism: Spirodela polyrhiza

RNA-directed DNA methylation transposable elements Spirodela polyrhiza histone modifications small interfering RNAs