Keywords: decoding modules, transposable elements, transcriptome reprogramming, CO2 enrichment, stress response

Latest 17 Papers

Integrative transcriptomic and phosphoproteomic analysis reveals key components of SnRK1 signaling network in rice

Authors: Faria-Bates, M. C., Maurya, C., Jamsheer K, M., Srivastava, V.

Date: 2025-07-23 · Version: 1

DOI: 10.1101/2025.07.22.666209

Model Organism: Oryza sativa

SnRK1 rice CRISPR/Cas9 phosphoproteomics stress response

Somatic mobility of transposons is explosive and shaped by distinct integration biases in Arabidopsis thaliana

Authors: Ambreen, H., Leduque, B., Quadrana, L., Slotkin, R. K., Bousios, A., Nuetzmann, H.-W.

Date: 2025-07-18 · Version: 1

DOI: 10.1101/2025.07.14.664700

Model Organism: Arabidopsis thaliana

transposable elements somatic transposition Arabidopsis thaliana chromatin integration bias epigenetic mutants

An allelic resolution gene atlas for tetraploid potato provides insights into tuberization and stress resilience

Authors: Brose, J., Martin, D., Wang, Y.-W., Wood, J. C., Vaillancourt, B., Hamilton, J. P., Buell, C. R.

Date: 2025-06-27 · Version: 1

DOI: 10.1101/2025.06.26.661617

Model Organism: Solanum tuberosum

tuberization gene expression atlas coexpression modules stress response tetraploid potato

SnRK1.1 Coordinates Organ-Specific Growth-Defense Programs via Transcriptomic Rewiring in Arabidopsis thaliana

Authors: Kalachova, T., Muller, K., Lacek, J., Pree, S., Antonova, A., Bondarenko, O., Burketova, L., Retzer, K., Weckwerth, W.

Date: 2025-04-29 · Version: 1

DOI: 10.1101/2025.04.25.650715

Model Organism: Arabidopsis thaliana

SnRK1 KIN10 transcriptome reprogramming plant immunity tissue-specific signaling

Tomato Omics Research: Mapping Bibliometric Footprints of Global Research Trends, Collaboration Networks, and Impact Trajectories

Authors: Prabha, R., Kumar, A., Shukla, R., Singh, D. P.

Date: 2025-04-22 · Version: 1

DOI: 10.1101/2025.04.17.649284

Model Organism: Solanum lycopersicum

tomato omics bibliometric analysis microRNA stress response

Elucidating tissue and sub-cellular specificity of the entire SUMO network reveals how stress responses are fine-tuned in a eukaryote

Authors: Sadanandom, A., Banda, J., Ghosh, S., Roy, D., Bishopp, A., Jones, A., Sharma, E., Sue-Ob, K., Clark, L., Band, L. R., Lilley, K. S., Bennett, M. J., Ingole, K., De Lucas, M., Bhosale, R.

Date: 2025-04-08 · Version: 1

DOI: 10.1101/2025.04.08.647708

Model Organism: Arabidopsis thaliana

SUMOylation Arabidopsis root cell atlas stress response tissue-specific regulation

Atypical epigenetic and small RNA control of degenerated transposons and their fragments in clonally reproducing Spirodela polyrhiza

Authors: Dombey, R., Buendia-Avila, D., Barragan-Borrero, V., Diezma-Navas, L., Ponce-Mane, A., Vargas-Guerrero, J. M., Elias, R., Mari-Ordonez, A.

Date: 2025-01-27 · Version: 2

DOI: 10.1101/2024.04.03.587901

Model Organism: Spirodela polyrhiza

RNA-directed DNA methylation transposable elements Spirodela polyrhiza histone modifications small interfering RNAs

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