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AI-summarized plant biology research papers from bioRxiv

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High-frequency sorghum transformation toolkit enhances Cas9 efficiency and expands promoter-editing capability with SpRY

Authors: Shen, J., Aregawi, K., Anwar, S., Miller, T., Groover, E. D., Rajkumar, M., Savage, D. F., Lemaux, P. G.

Date: 2025-12-07 · Version: 2
DOI: 10.1101/2025.01.21.634149

Category: Plant Biology

Model Organism: Sorghum bicolor

AI Summary

The study presents an optimized Agrobacterium-mediated transformation toolkit for Sorghum bicolor that achieves up to 95.7% editing efficiency using CRISPR/Cas9 targeting the SbPDS gene, and demonstrates comparable performance with a PAM‑broadened SpRY variant. This platform enables multiplex genome editing and is positioned for integration of advanced tools such as prime and base editors to accelerate sorghum breeding.

Sorghum bicolor CRISPR/Cas9 Agrobacterium-mediated transformation SpRY (PAM‑flexible Cas9) high-efficiency genome editing

Single-cell-level response to drought in Sorghum bicolor reveals novel targets for improving water use efficiency

Authors: Stata, M., Greenblum, S., Yoshinaga, Y., Koriabine, M., Keymanesh, K., Karia, P., Zhao, C., O'Malley, R. C., Rhee, S. Y.

Date: 2025-08-28 · Version: 1
DOI: 10.1101/2025.08.28.671794

Category: Plant Biology

Model Organism: Sorghum bicolor

AI Summary

The study applied single-nucleus RNA sequencing to mature Sorghum bicolor leaves under well‑watered and drought conditions, identifying major leaf cell types and their transcriptional responses. Drought induced transcriptomic changes that surpassed cell‑type differences, indicating a common response across mesophyll, bundle sheath, epidermal, vascular, and stomatal cells, and enabling the identification of candidate drought‑responsive regulators for improving water‑use efficiency.

drought stress Sorghum bicolor single-nucleus RNA sequencing cell-type specific transcription bioenergy crop

Transcriptional shifts and microbiome dynamics in sorghum roots during vegetative growth under drought stress

Authors: Kabir, A. H., Brailey-Jones, P., Abdelrahman, M., Legeay, J., Ahmed, B., Tran, L.-S. P., Bennetzen, J. L.

Date: 2025-02-15 · Version: 4
DOI: 10.1101/2024.07.19.604343

Category: Plant Biology

Model Organism: Sorghum bicolor

AI Summary

The study shows that drought triggers ABA accumulation and JA reduction in sorghum roots, accompanied by transcriptional activation of genes linked to mineral homeostasis, hormone signaling, and osmotic regulation, while Fe supplementation enhances ferritin expression and mitigates oxidative stress. Drought also diminishes root bacterial diversity but enriches beneficial taxa such as Burkholderia, whereas fungal diversity remains stable, and functional profiling reveals shifts toward phototrophy, methylotrophy, and nitrate reduction. These findings highlight ferritin’s protective role and suggest specific bacterial inoculants for improving sorghum drought resilience.

sorghum drought stress ferritin root microbiome LC-MS