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DNA methylation mediates transcriptional stability and transposon-driven trans-regulation under drought in wheat

Authors: Reynolds, I. J., Barratt, L. J., Harper, A. L.

Date: 2025-12-05 · Version: 1
DOI: 10.64898/2025.12.04.692301

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study used paired whole‑genome bisulphite sequencing and RNA‑seq on wheat landraces to investigate how DNA methylation patterns change during drought stress, revealing antagonistic trends across cytosine contexts and a key demethylation role for ROS1a family members. Gene‑body methylation correlated positively with expression but negatively with stress‑responsive changes, while drought‑induced hyper‑methylation of specific transposable elements, especially the RLX_famc9 LTR retrotransposon, appears to modulate downstream gene regulation via siRNA precursors.

drought stress DNA methylation Triticum aestivum ROS1a demethylase transposable elements

Vacuolar invertase knockout enhances drought tolerance in potato plants

Authors: Roitman, M., Teper-Bamnolker, P., Doron-Faigenboim, A., Sikron, N., Fait, A., Vrobel, O., Tarkowski, P., Moshelion, M., Bocobza, S., Eshel, D.

Date: 2025-12-02 · Version: 1
DOI: 10.64898/2025.12.01.691554

Category: Plant Biology

Model Organism: Solanum tuberosum

AI Summary

CRISPR/Cas9 knockout of the vacuolar invertase gene (StVInv) in potato enhanced drought resilience, with mutants maintaining higher stomatal conductance, transpiration, and photosynthetic efficiency, leading to improved agronomic water-use efficiency and biomass under water limitation. Metabolomic profiling showed accumulation of galactinol and raffinose, while ABA levels were reduced, indicating altered osmoprotective and hormonal responses that support sustained growth during drought.

drought stress vacuo lar invertase knockout CRISPR/Cas9 raffinose family oligosaccharides water-use efficiency

Transcriptome and hormone regulations shape drought stress-dependent Fusarium Head Blight susceptibility in different barley genotypes

Authors: Hoheneder, F., Steidele, C. E., Gigl, M., Dawid, C., Hueckelhoven, R.

Date: 2025-11-25 · Version: 1
DOI: 10.1101/2025.11.23.689882

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

Four barley genotypes were examined under simultaneous Fusarium culmorum infection and drought, revealing genotype-dependent Fusarium Head Blight severity and largely additive transcriptomic responses dominated by drought. Co‑expression and hormone profiling linked ABA and auxin to stress‑specific gene modules, and a multiple linear regression model accurately predicted combined‑stress gene expression from single‑stress data, suggesting modular regulation.

Fusarium Head Blight drought stress barley hormone profiling transcriptome analysis

The mRNA covalent modification dihydrouridine regulates transcript turnover and photosynthetic capacity during plant abiotic stress

Authors: Yu, L., Melandri, G., Dittrich, A. C., Calleja, S., Rozzi, B., Ganguly, D. R., Palos, K., Srinivasan, A., Brewer, E. K., Fischer, H., Obata, T., Elgawad, H. A., Beemster, G. T. S., Henderson, R., Garcia, C. D., Zhang, X., Stern, D., Eveland, A., Schroeder, S. J., Skirycz, A., Lyons, E., Arnold, E. A., Gregory, B. D., Nelson, A. D. L., Pauli, D.

Date: 2025-11-24 · Version: 3
DOI: 10.1101/2025.01.17.633510

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study integrates multi-omics data from six Sorghum bicolor accessions under field drought to link RNA covalent modifications (RCMs) with photosynthetic performance, identifying the enzyme SbDUS2 that produces dihydrouridine (DHU) on transcripts. Loss‑of‑function dus2 mutants in Arabidopsis thaliana reveal that DHU deficiency leads to hyperstability of photosynthesis‑related mRNAs, impairing germination, development, and stress‑induced CO2 assimilation. The authors propose DHU as a post‑transcriptional mark that promotes rapid mRNA turnover during abiotic stress, enhancing plant resilience.

RNA covalent modifications dihydrouridine (DHU) drought stress photosynthesis RNA stability

Systematic Analysis of the EXO70 Gene Family in Kiwifruit Species: Evolutionary Selection and Potential Functions in Plant Immunity

Authors: Cui, W., DENG, C. H., Yoon, M. H., Zarsky, V., Rikkerink, E. H. A.

Date: 2025-10-28 · Version: 1
DOI: 10.1101/2025.10.28.684437

Category: Plant Biology

Model Organism: Actinidia spp.

AI Summary

A genome-wide survey identified 217 EXO70 genes across five kiwifruit (Actinidia spp.) species, classifying them into three subfamilies and nine clades and revealing lineage‑specific expansions, especially in EXO70C, EXO70E, and EXO70H. Functional assays demonstrated that kiwifruit EXO70B1 interacts with the immune hub protein RIN4_1, suggesting a conserved EXO70‑RIN4 module in plant immunity. The study provides a foundational resource for exploring EXO70‑mediated disease resistance in kiwifruit.

EXO70 gene family Actinidia vesicle trafficking plant immunity RIN4 interaction

Immunovisualization of spatial changes in leaves and root tissue associated with drought stress in wheat (Triticum aestivum L.)

Authors: Leszczuk, A., Kutyrieva-Nowak, N., Skrzypek, T.

Date: 2025-10-07 · Version: 1
DOI: 10.1101/2025.10.06.680837

Category: Plant Biology

Model Organism: General

AI Summary

The study employed immunofluorescence labeling and fluorescence intensity quantification to examine tissue-specific cellular modifications in plants under drought stress, revealing targeted alterations in proteoglycans, polysaccharides, and AGPs in leaves and roots. These findings highlight the importance of in planta analyses for accurately capturing stress-induced structural changes.

drought stress immunofluorescence labeling proteoglycans arabinogalactan proteins (AGP) tissue-specific adaptation

Cellular energy sensor SnRK1 suppresses salicylic acid-dependent and -independent defenses and bacterial resistance in Arabidopsis

Authors: Jie, L., Sanagi, M., Yasuda, S., Yamada, K., Ejima, S., Sugisaki, A., Takagi, J., Nomoto, M., Xin, X., Tada, Y., Saijo, Y., Sato, T.

Date: 2025-10-01 · Version: 1
DOI: 10.1101/2025.10.01.679707

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reveals that the energy sensor SnRK1 modulates Arabidopsis defense by repressing SA‑dependent gene expression and bacterial resistance, with its activity enhanced under high humidity. SnRK1 interacts with TGA transcription factors to attenuate PR1 expression, linking cellular energy status to immune regulation.

SnRK1 salicylic acid signaling plant immunity energy status high humidity

A Key Role for S-Nitrosylation in Immune Regulation and Development in the Liverwort Marchantia polymorpha

Authors: Goodrich, J.

Date: 2025-09-30 · Version: 1
DOI: 10.1101/2025.09.29.679193

Category: Plant Biology

Model Organism: Marchantia polymorpha

AI Summary

The study characterizes the single-copy S-nitrosoglutathione reductase 1 (MpGSNOR1) in the liverwort Marchantia polymorpha, showing that loss-of-function mutants generated via CRISPR/Cas9 exhibit marked morphological defects and compromised SNO homeostasis and immune responses. These findings indicate that GSNOR-mediated regulation of S‑nitrosylation is an ancient mechanism linking development and immunity in early land plants.

Nitric oxide S-nitrosylation GSNOR Marchantia polymorpha plant immunity

Oxidative stress-induced proteolytic activation of polyphenol oxidase triggers an oxidized flavonoids-mediated stress signaling in Camellia sinensis

Authors: Mohapatra, S., Mishra, A., Godara, R., Bali, S., Twinkle,, Kumar, A., Kumar, R., Kumar, N., Kumar, P., Acharya, V., Dogra, V.

Date: 2025-09-25 · Version: 1
DOI: 10.1101/2025.09.23.677533

Category: Plant Biology

Model Organism: Camellia sinensis

AI Summary

The study discovers that drought stress triggers proteolytic activation of chloroplast‑localized polyphenol oxidase (PPO) in Camellia sinensis, converting catechins into theaflavins that act as signaling molecules to induce an unfolded protein response and IRE1‑bZIP60‑dependent programmed cell death. Germplasm comparison, transcriptomic profiling, virus‑induced silencing, PPO overexpression, and pharmacological feeding experiments demonstrate that this PPO‑theaflavin pathway is a conserved stress sensor across species such as tomato and wheat.

polyphenol oxidase theaflavins unfolded protein response programmed cell death drought stress

Single-cell-level response to drought in Sorghum bicolor reveals novel targets for improving water use efficiency

Authors: Stata, M., Greenblum, S., Yoshinaga, Y., Koriabine, M., Keymanesh, K., Karia, P., Zhao, C., O'Malley, R. C., Rhee, S. Y.

Date: 2025-08-28 · Version: 1
DOI: 10.1101/2025.08.28.671794

Category: Plant Biology

Model Organism: Sorghum bicolor

AI Summary

The study applied single-nucleus RNA sequencing to mature Sorghum bicolor leaves under well‑watered and drought conditions, identifying major leaf cell types and their transcriptional responses. Drought induced transcriptomic changes that surpassed cell‑type differences, indicating a common response across mesophyll, bundle sheath, epidermal, vascular, and stomatal cells, and enabling the identification of candidate drought‑responsive regulators for improving water‑use efficiency.

drought stress Sorghum bicolor single-nucleus RNA sequencing cell-type specific transcription bioenergy crop
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