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AI-summarized plant biology research papers from bioRxiv

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Latest 51 Papers

Phosphite, an analog of phosphate, counteracts Phosphate Induced Susceptibility of rice to the blast fungus Magnaporthe oryzae

Authors: Mallavarapu, M. D., Martin-Cardoso, H., Bücker, G., Alussi, M., Garcia-Molina, A., San Segundo, B.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.700763

Category: Plant Biology

Model Organism: Multi-species

AI Summary

Phosphite (Phi) and phosphate (Pi) share the same root uptake system, but Phi acts as a biostimulant that modulates plant growth and disease resistance in a species‑ and Pi‑dependent manner. In Arabidopsis, Phi induces hypersensitive‑like cell death and enhances resistance to Plectosphaerella cucumerina, while in rice it counteracts Pi‑induced susceptibility to Magnaporthe oryzae and Fusarium fujikuroi, accompanied by extensive transcriptional reprogramming.

phosphite (Phi) phosphate (Pi) plant immunity pathogen resistance transcriptomic reprogramming

Decoding stage-specific symbiotic programs in the Rhizophagus irregularis-tomato interaction using single-nucleus transcriptomics

Authors: Stuer, N., Leroy, T., Eekhout, T., De Keyser, A., Staut, J., De Rybel, B., Vandepoele, K., Van Damme, P., Van Dingenen, J., Goormachtig, S.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.701092

Category: Plant Biology

Model Organism: Solanum lycopersicum

AI Summary

The study generated the first single‑nucleus RNA‑sequencing dataset of tomato (Solanum lycopersicum) roots colonized by the arbuscular mycorrhizal fungus Rhizophagus irregularis, revealing distinct transcriptional programs in epidermal and cortical cells across stages of arbuscule development. Using unsupervised subclustering and a Motif‑Informed Network Inference (MINI‑EX) approach, the authors identified candidate transcription factors that may coordinate cell‑cycle reactivation and nutrient integration during symbiosis, offering a resource for future functional genetics.

arbuscular mycorrhizal symbiosis single-nucleus RNA sequencing Solanum lycopersicum transcription factor network inference root cortical development

A Savory-based Formulation for Sustainable Management of Early Blight caused by Alternaria solani and Preservation of Tomato Fruit Quality

Authors: Lak, F., Omrani, A., Nikkhah, M. J., Gohari, A. M., Nicolaisen, M., Abuali, M., Ahmadzadeh, M.

Date: 2026-01-22 · Version: 1
DOI: 10.64898/2026.01.20.700539

Category: Plant Biology

Model Organism: Solanum lycopersicum

AI Summary

The study assessed three savory essential oil–based formulations for controlling early blight caused by Alternaria solani in tomato, finding that formulation CC2020 most effectively reduced disease severity in both in vitro and greenhouse trials. CC2020 also helped maintain tomato fruit vitamin C levels and lowered fungal melanin production, indicating dual benefits for disease suppression and fruit quality.

early blight Solanum lycopersicum savory essential oil biocompatible formulation fruit quality

Overexpression of PtaHDG11 enhances drought tolerance and suppresses trichome formation in Populus tremula x Populus alba

Authors: Fendel, A., Fladung, M., Bruegmann, T.

Date: 2026-01-13 · Version: 1
DOI: 10.64898/2026.01.12.699028

Category: Plant Biology

Model Organism: Populus tremula × Populus alba

AI Summary

The study identified the poplar homolog of Arabidopsis HDG11 and generated transgenic poplar hybrids overexpressing PtaHDG11. Constitutive expression conferred markedly improved drought tolerance, as evidenced by higher leaf water content, reduced oxidative damage, up‑regulation of antioxidant genes, and greater post‑stress biomass, while also causing a glabrous phenotype. These results highlight PtaHDG11 as a promising target for breeding drought‑resilient trees.

HDG11 drought tolerance Populus hybrid antioxidant genes transgenic overexpression

Effects of atmospheric CO2 levels on the susceptibility of maize to diverse pathogens

Authors: Khwanbua, E., Qi, Y., Ssengo, J., Liu, P., Graham, M. A., Whitham, S.

Date: 2026-01-02 · Version: 1
DOI: 10.64898/2025.12.31.697224

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study examined how elevated atmospheric CO₂ (550 ppm) affects immunity in the C₄ cereal maize (Zea mays L.) by exposing plants grown under ambient and elevated CO₂ to a range of pathogens. Elevated CO₂ increased susceptibility to sugarcane mosaic virus, decreased susceptibility to several bacterial and fungal pathogens, and left susceptibility to others unchanged, with reduced bacterial disease linked to heightened basal immune responses. These findings provide a baseline for future investigations into CO₂‑responsive defense mechanisms in C₄ crops.

elevated CO₂ maize plant immunity pathogen susceptibility C4 crops

The CCCH Zinc Finger Gene PgCCCH50 from Pearl Millet Confers Drought and Salt Tolerance through an ABA-Dependent PgAREB1-PgCCCH50 Module

Authors: xie, z., zhu, J., Yu, G., Ma, X., Zhou, Y., Yan, H., Huang, L.

Date: 2025-12-25 · Version: 1
DOI: 10.64898/2025.12.23.696222

Category: Plant Biology

Model Organism: Pennisetum glaucum

AI Summary

The authors performed a genome-wide analysis of 53 CCCH zinc‑finger genes in pearl millet, identified seven stress‑responsive members and demonstrated that overexpressing PgC3H50 in Arabidopsis enhances drought and salt tolerance. They showed that the ABA‑responsive transcription factor PgAREB1 directly binds the PgC3H50 promoter, activating its expression, as confirmed by yeast one‑hybrid, dual‑luciferase and EMSA assays, defining a new PgAREB1‑PgC3H50 regulatory module.

CCCH zinc finger proteins drought tolerance salinity stress ABA signaling Pearl millet

In vivo binding by Arabidopsis SPLICING FACTOR 1 shifts 3' splice site choice, regulating circadian rhythms and immunity in plants

Authors: Agrofoglio, Y. C., Iglesias, M. J., de Leone, M. J., Hernando, C. E., Lewinski, M., Torres, S. B., Contino, G., Yanovsky, M. J., Staiger, D., Mateos, J. L.

Date: 2025-12-17 · Version: 1
DOI: 10.64898/2025.12.17.693997

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study characterizes the plant spliceosomal protein AtSF1 in Arabidopsis thaliana, using iCLIP and RNA‑seq to map its in vivo branch point binding sites and demonstrate that loss of AtSF1 causes widespread 3' splice‑site mis‑selection. Structural comparison reveals a plant‑specific domain architecture, and the identified AtSF1 targets are enriched for circadian and defense genes, linking splicing regulation to timing and immunity.

alternative splicing branch point recognition AtSF1 circadian clock regulation plant immunity

Genetic Insights from Line x Tester Analysis of Maize Lethal Necrosis Testcrosses for Developing Multi-Stress-Resilient Hybrids in Sub-Saharan Africa

Authors: Gowda, M., Beyene, Y., L.M., S., Ogugo, V., Amadu, M. K., Chaikam, V.

Date: 2025-12-09 · Version: 1
DOI: 10.64898/2025.12.07.692857

Category: Plant Biology

Model Organism: Zea mays

AI Summary

A comprehensive multi‑environment trial of 437 maize testcross hybrids derived from 38 MLN‑tolerant lines and 29 testers identified additive genetic effects as the primary driver of grain yield, disease resistance, and drought tolerance. Strong general combining ability and specific combining ability patterns were uncovered, with top hybrids delivering up to 5.75 t ha⁻¹ under MLN pressure while maintaining high performance under optimum and drought conditions. The study provides a framework for selecting elite parents and exploiting both additive and non‑additive effects to develop resilient maize hybrids for sub‑Saharan Africa.

maize lethal necrosis (MLN) drought tolerance grain yield combining ability GGE biplot

Consistent drought regulation in grapevine is driven by directional transcription factor activity

Authors: Vasquez-Marambio, G., Moyano, T., Navarro, D., Sequeida, A., Gainza-Cortes, F., Matus, J. T., Orellana, A., Alvarez, J. M.

Date: 2025-11-16 · Version: 1
DOI: 10.1101/2025.11.14.688560

Category: Plant Biology

Model Organism: Vitis vinifera

AI Summary

The study performed a meta‑transcriptomic analysis of over twenty drought versus control experiments in Vitis vinifera and two hybrid rootstocks, identifying a core set of 4,617 drought‑responsive genes. Using transcription factor binding motif enrichment and random‑forest machine learning, gene regulatory networks were built, revealing key regulators such as ABF2, MYB30A, and a novel HMG‑box protein. These regulators and network hierarchies provide candidate targets for breeding and biotechnological improvement of grapevine drought tolerance.

drought tolerance Vitis vinifera gene regulatory network transcription factors meta‑transcriptomics

The O-glycosyltransferase SECRET AGENT Participates in Abscisic Acid-Induced Microtubule Remodeling and Stomatal Closure in Arabidopsis thaliana

Authors: Sun, P., Wu, Y., Wang, P., Hu, M., Wang, Z., Yu, R., Li, J.

Date: 2025-10-31 · Version: 1
DOI: 10.1101/2025.10.29.683829

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reveals that the Arabidopsis O-GlcNAc transferase SEC is essential for timely ABA‑induced stomatal closure and drought tolerance, with sec-5 mutants showing delayed closure and increased water loss, while SEC overexpression enhances responsiveness. SEC influences guard‑cell microtubule remodeling, as loss of SEC impairs microtubule reorganization and SEC directly interacts with tubulin α‑4, suggesting tubulin as a target of O‑GlcNAcylation.

O-GlcNAc transferase ABA-induced stomatal closure microtubule dynamics drought tolerance Arabidopsis thaliana
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