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Multi-Level Characterization Reveals Divergent Heat Response Strategies Across Wheat Genotypes of Different Ploidy

Authors: Arenas-M, A., Mino, I., Uauy, C., Calderini, D. F., Canales, J.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.701169

Category: Plant Biology

Model Organism: Multi-species

AI Summary

Field experiments combined with RNA sequencing revealed that wheat ploidy influences heat stress resilience, with tetraploid T. turgidum showing the smallest yield loss and hexaploid T. aestivum mounting the largest transcriptional response. Ploidy-dependent differences were observed in differential gene expression, alternative splicing—including hexaploid-specific exon skipping of NF‑YB—and co‑expression networks linked to grain traits, highlighting candidate pathways for breeding heat‑tolerant wheat.

heat stress wheat ploidy RNA sequencing differential gene expression alternative splicing

Transcriptional responses of Solanum lycopersicum to three distinct parasites reveal host hubs and networks underlying parasitic successes

Authors: Truch, J., Jaouannet, M., Da Rocha, M., Kulhanek-Fontanille, E., Van Ghelder, C., Rancurel, C., Migliore, O., Pere, A., Jaubert, S., Coustau, C., Galiana, E., Favery, B.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.701158

Category: Plant Biology

Model Organism: Solanum lycopersicum

AI Summary

The study used transcriptomic profiling to compare tomato (Solanum lycopersicum) responses to three evolutionarily distant pathogens—nematodes, aphids, and oomycetes—during compatible interactions, identifying differentially expressed genes and key host hubs. Integrating public datasets and performing co‑expression and GO enrichment analyses, the authors mapped shared dysregulation clusters and employed Arabidopsis interactome data to place tomato candidates within broader networks, highlighting potential targets for multi‑pathogen resistance.

tomato pathogen compatibility transcriptomics co‑expression network Arabidopsis interactome

The genetic architecture of leaf vein density traits and its importance for photosynthesis in maize

Authors: Coyac-Rodriguez, J. L., Perez-Limon, S., Hernandez-Jaimes, E., Hernandez-Coronado, M., Camo-Escobar, D., Alonso-Nieves, A. L., Ortega-Estrada, M. d. J., Gomez-Capetillo, N., Sawers, R. J., Ortiz-Ramirez, C. H.

Date: 2026-01-15 · Version: 1
DOI: 10.64898/2026.01.14.699362

Category: Plant Biology

Model Organism: Zea mays

AI Summary

Using diverse Mexican maize varieties and a MAGIC population, the study demonstrated that leaf vein density is both variable and plastic, correlating positively with photosynthetic rates for small intermediate veins and increasing under heat in drought-adapted lines. Twelve QTLs linked to vein patterning were identified, highlighting candidate genes for intermediate vein development and shedding light on the evolution of high-efficiency C4 leaf architecture.

leaf venation density C4 photosynthesis Zea mays QTL mapping MAGIC population

Root phenolics as potential drivers of preformed defenses and reduced disease susceptibility in a paradigm bread wheat mixture

Authors: Mathieu, L., Chloup, A., Marty, S., Savajols, J., Paysant-Le Roux, C., Launay-Avon, A., Martin, M.-L., Totozafy, J.-C., Perreau, F., Rochepeau, A., Rouveyrol, C., Petriacq, P., Morel, J.-B., Meteignier, L.-V., Ballini, E.

Date: 2026-01-14 · Version: 1
DOI: 10.64898/2026.01.13.699261

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study created a system that blocks root‑mediated signaling between wheat varieties in a varietal mixture and used transcriptomic and metabolomic profiling to reveal that root chemical interactions drive reduced susceptibility to Septoria tritici blotch, with phenolic compounds emerging as key mediators. Disruption of these root signals eliminates both the disease resistance phenotype and the associated molecular reprogramming.

root-mediated interactions bread wheat Septoria tritici blotch transcriptomics metabolomics

Ultra large-scale 2D clinostats uncover environmentally derived variation in tomato responses to simulated microgravity

Authors: Hostetler, A. N., Kennebeck, E., Reneau, J. W., Birtell, E., Caldwell, D. L., Iyer-Pascuzzi, A. S., Sparks, E. E.

Date: 2026-01-13 · Version: 2
DOI: 10.1101/2025.05.16.654566

Category: Plant Biology

Model Organism: Solanum lycopersicum (tomato)

AI Summary

The study employed ultra large‑scale 2D clinostats to grow tomato (Solanum lycopersicum) plants beyond the seedling stage under simulated microgravity and upright control conditions across five sequential trials. Simulated microgravity consistently affected plant growth, but the magnitude and direction of the response varied among trials, with temperature identified as a significant co‑variant; moderate heat stress surprisingly enhanced growth under simulated microgravity. These results highlight the utility of large‑scale clinostats for dissecting interactions between environmental factors and simulated microgravity in plant development.

simulated microgravity ultra large-scale clinostat tomato (Solanum lycopersicum) heat stress plant growth interaction

The STA1-DOT2 interaction promotes nuclear speckle formation and splicing robustness in growth and heat stress responses

Authors: Kim, H., Yu, K.-j., Park, S. Y., Seo, D. H., Jeong, D.-H., Kim, W. T., Yun, D.-J., Lee, B.-h.

Date: 2026-01-12 · Version: 1
DOI: 10.64898/2026.01.11.698856

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that the interaction between spliceosomal proteins STA1 and DOT2 controls nuclear speckle organization, pre‑mRNA splicing efficiency, and heat‑stress tolerance in Arabidopsis thaliana. A missense mutation in DOT2 restores the weakened STA1‑DOT2 interaction in the sta1‑1 mutant, linking interaction strength to speckle formation and transcriptome‑wide intron retention under heat stress, while pharmacological inhibition of STA1‑associated speckles reproduces the mutant phenotypes. These findings reveal a heat‑sensitive interaction node that couples spliceosome assembly to nuclear speckle dynamics and splicing robustness.

spliceosome nuclear speckles STA1‑DOT2 interaction heat stress Arabidopsis thaliana

A novel pathosystem between Aeschynomene evenia and Aphanomyces euteiches reveals new immune components in quantitative legume root-rot resistance.

Authors: Baker, M., Martinez, Y., Keller, J., Sarrette, B., Pervent, M., Libourel, C., Le Ru, A., Bonhomme, M., Gough, C., Castel, B., ARRIGHI, J.-F., Jacquet, C.

Date: 2026-01-11 · Version: 1
DOI: 10.64898/2026.01.11.698850

Category: Plant Biology

Model Organism: Aeschynomene evenia

AI Summary

The study establishes Aeschynomene evenia as a new model for dissecting legume immunity against the soilborne pathogen Aphanomyces euteiches and its relationship with Nod factor-independent symbiosis. Quantitative resistance was assessed through inoculation assays, phenotypic and cytological analyses, and RNA‑seq identified thousands of differentially expressed genes, highlighting immune signaling and specialized metabolism, with mutant analysis confirming dual‑function kinases that modulate resistance. Comparative transcriptomics with Medicago truncatula revealed conserved and unique immune responses, positioning the A. evenia–A. euteiches system as a valuable platform for exploring quantitative resistance and symbiosis integration.

legume immunity Aphanomyces euteiches quantitative resistance transcriptomics Nod factor-independent symbiosis

Investigating the apical notch, apical dominance and meristem regeneration in Marchantia polymorpha.

Authors: Marron, A. O.

Date: 2026-01-10 · Version: 5
DOI: 10.1101/2024.02.04.575544

Category: Plant Biology

Model Organism: Marchantia polymorpha

AI Summary

Using laser ablation microscopy, the study dissected the role of the first cell row and a contiguous stem cell quorum in the apical notches of germinating Marchantia gemmae, revealing that these cells are essential for meristem activity and that apical notches communicate via auxin‑mediated signals to regulate dominance and regeneration. The findings support a model of intra‑, inter‑, and extra‑notch communication governing meristem formation and maintenance in Marchantia.

meristem maintenance apical dominance laser ablation microscopy auxin signaling Marchantia gemma

Southern South American Maize Landraces: A Source of Phenotypic Diversity

Authors: Dudzien, T. L., Freilij, D., Defacio, R. A., Fernandez, M., Paniego, N. B., Lia, V. V., Dominguez, P. G.

Date: 2026-01-03 · Version: 1
DOI: 10.64898/2026.01.02.697242

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study assessed 17 morphological, biochemical, and salt‑stress tolerance traits in 19 maize (Zea mays) landrace accessions from northern Argentina, revealing substantial variation both within and among accessions. Redundancy analysis linked phenotypic variation to the altitude of the collection sites, underscoring the potential of these landraces as sources of diverse biochemical and stress‑related traits for breeding.

Zea mays maize landraces phenotypic diversity biochemical traits salt stress tolerance

A chloroplast-localized protein AT4G33780 regulates Arabidopsis development and stress-associated responses

Authors: Yang, Z.

Date: 2026-01-03 · Version: 1
DOI: 10.64898/2026.01.03.697459

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study characterizes the chloroplast‑localized protein AT4G33780 in Arabidopsis thaliana using CRISPR/Cas9 knockout and overexpression lines, revealing tissue‑specific expression and context‑dependent effects on seed germination, seedling growth, vegetative development, and root responses to nickel stress. Integrated transcriptomic (RNA‑seq) and untargeted metabolomic analyses show extensive transcriptional reprogramming—especially of cell‑wall genes—and altered central energy metabolism, indicating AT4G33780 coordinates metabolic state with developmental regulation rather than controlling single pathways.

AT4G33780 chloroplast regulator Arabidopsis thaliana transcriptomics metabolomics
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