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AI-summarized plant biology research papers from bioRxiv

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Multi-Level Characterization Reveals Divergent Heat Response Strategies Across Wheat Genotypes of Different Ploidy

Authors: Arenas-M, A., Mino, I., Uauy, C., Calderini, D. F., Canales, J.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.701169

Category: Plant Biology

Model Organism: Multi-species

AI Summary

Field experiments combined with RNA sequencing revealed that wheat ploidy influences heat stress resilience, with tetraploid T. turgidum showing the smallest yield loss and hexaploid T. aestivum mounting the largest transcriptional response. Ploidy-dependent differences were observed in differential gene expression, alternative splicing—including hexaploid-specific exon skipping of NF‑YB—and co‑expression networks linked to grain traits, highlighting candidate pathways for breeding heat‑tolerant wheat.

heat stress wheat ploidy RNA sequencing differential gene expression alternative splicing

Evolution of HMA-integrated tandem kinases accompanied by expansion of target pathogens

Authors: Asuke, S., Tagle, A. G., Hyon, G.-S., Koizumi, S., Murakami, T., Horie, A., Niwamoto, D., Katayama, E., Shibata, M., Takahashi, Y., Islam, M. T., Matsuoka, Y., Yamaji, N., Shimizu, M., Terauchi, R., Hisano, H., Sato, K., Tosa, Y.

Date: 2025-12-16 · Version: 1
DOI: 10.64898/2025.12.15.692859

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study cloned the resistance genes Rmo2 and Rwt7 from barley and wheat, revealing them as orthologous tandem kinase proteins (TKPs) with an N‑terminal heavy metal‑associated (HMA) domain. Domain‑swapping experiments indicated that the HMA domain dictates effector specificity, supporting a model of TKP diversification into paralogs and orthologs that recognize distinct pathogen effectors.

tandem kinase proteins HMA domain disease resistance barley wheat

Ethylene-induced host responses enhance resistance against the root-parasitic plant Phelipanche aegyptiaca

Authors: Park, S., Yang, C., Westwood, J.

Date: 2025-10-06 · Version: 1
DOI: 10.1101/2025.10.05.680554

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study demonstrates that ethylene signaling contributes to host resistance against the root parasitic plant Phelipanche aegyptiaca, as both water stress and parasitism activate ethylene responses in Arabidopsis roots. Application of the ethylene precursor ACC reduced parasite attachment, and mutants in ethylene signaling components (ETR1, CTR1) showed altered tolerance, highlighting ethylene-mediated defenses as a potential strategy for crop protection.

Phelipanche aegyptiaca ethylene signaling host resistance parasitic weed Arabidopsis thaliana

TAC-C uncovers open chromatin interaction in crops and SPL-mediated photosynthesis regulation

Authors: Kang, J., Zhang, Z., Lin, X., Liu, F., Song, Y., Zhao, P., Lin, Y., Luo, X., Li, X., Li, Y., Wang, W., Liu, C., Xu, S., Liu, X., Xiao, J.

Date: 2025-02-10 · Version: 1
DOI: 10.1101/2025.02.10.637364

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study introduces Transposase-Accessible Chromosome Conformation Capture (TAC-C), which combines ATAC‑seq and Hi‑C to map fine‑scale chromatin interactions in rice, sorghum, maize, and wheat, revealing genome‑size‑correlated loop structures and distinct C3 vs. C4 patterns. Integration with population genetics shows that loops link distal regulatory elements to phenotypic variation, and SPL transcription factors (TaSPL7/15) modulate photosynthesis‑related genes via these interactions, enhancing photosynthetic efficiency and starch content in wheat mutants.

cis-regulatory elements chromatin loops TAC-C photosynthesis regulation wheat