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AI-summarized plant biology research papers from bioRxiv

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DNA Methylation Dynamics Reveal Unique Plant Responses and Transcriptional Reprogramming to Combined Heat and Phosphate Deficiency Stress

Authors: Lozano-Enguita, A., Victoria Baca-Gonzalez, V., Morillas-Montaez, A., Pascual, J., Valledor, L., del Pozo, J. C., Caro, E.

Date: 2025-11-20 · Version: 1
DOI: 10.1101/2025.11.19.689328

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study examined DNA methylation dynamics in Arabidopsis thaliana shoots and roots under heat, phosphate deficiency, and combined stress using whole-genome bisulfite sequencing, small RNA‑seq, and RNA‑seq. Distinct stress‑specific methylation patterns were identified, with heat and combined stress causing CHH hypomethylation, phosphate deficiency causing hyper‑ and hypomethylation in shoots and roots respectively, and the combined stress exhibiting a unique signature independent of additive effects. Methylation changes were concentrated in transposable elements and regulatory regions, implicating RdDM and CMT2 pathways and suggesting a role in chromatin accessibility rather than direct transcriptional control.

DNA methylation heat stress phosphate deficiency Arabidopsis thaliana whole-genome bisulfite sequencing

Heat stress induces unreduced male gamete formation by targeting meiocyte translation

Authors: Schindfessel, C., Cairo, A., Mikulkova, P., Jin, C., Lamelas Penas, L., Wigge, P. A., Riha, K., Geelen, D. N. V.

Date: 2025-11-13 · Version: 3
DOI: 10.1101/2022.08.11.503651

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reveals that heat tolerance of meiotic division in Arabidopsis thaliana depends on sustained translation of cell‑cycle genes mediated by the protein TAM, which forms specialized condensates under high temperature. Natural variation was used to identify heat‑sensitive and heat‑tolerant TAM alleles, and boosting TAM translation with complementary peptides rescued heat‑induced meiotic defects, highlighting a potential mechanism driving polyploidisation under climate stress.

heat stress meiotic restitution TAM protein translation regulation polyploidisation

Thermotolerant pollen tube growth is controlled by RALF signaling.

Authors: Althiab Almasaud, R., Ouonkap Yimga, S. V., Ingram, J., Oseguera, Y., Alkassem Alosman, M., Travis, C., Henry, A., Medina, M., Oulhen, N., Wessel, G. M., Delong, A., Pease, J., DaSilva, N., Johnson, M.

Date: 2025-11-12 · Version: 2
DOI: 10.1101/2025.10.25.684177

Category: Plant Biology

Model Organism: Solanum lycopersicum

AI Summary

The study investigates the molecular basis of heat‑tolerant pollen tube growth in tomato (Solanum lycopersicum) by comparing thermotolerant and sensitive cultivars. Using live imaging, transcriptomics, proteomics, and genetics, the authors identified the Rapid Alkalinization Factor (RALF) signaling pathway as a key regulator of pollen tube integrity under high temperature, with loss of a specific RALF peptide enhancing tube integrity in a thermotolerant cultivar.

thermotolerant pollen tube growth heat stress RALF signaling pollen tube integrity tomato

Daily Heat Stress Induces Accumulation of Non-functional PSII-LHCII and Donor-side Limitation of PSI via Downregulation of the Cyt bf Complex in Arabidopsis thaliana

Authors: Laihonen, L., Tomberg, T., Vuorijoki, L., Mulo, P., Rantala, M.

Date: 2025-11-08 · Version: 1
DOI: 10.1101/2025.11.06.687104

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study examined the impact of daily moderate heat stress (38 °C for 4 h) on Arabidopsis thaliana, revealing altered thylakoid ultrastructure and structurally intact but functionally impaired PSII‑LHCII complexes. A pronounced reduction in cytochrome b6f content limited PSI on the donor side, suggesting that Cyt b6f down‑regulation serves as an acclimation mechanism that protects PSI at the expense of overall photosynthetic efficiency.

heat stress thylakoid ultrastructure photosystem II cytochrome b6f Arabidopsis thaliana

Dual recognition of structurally unrelated mildew effectors underlies the broad-spectrum resistance of Pm3e in wheat

Authors: Kunz, L., Bernasconi, Z., Heuberger, M., Isaksson, J., Sotiropoulos, A. G., Stirnemann, U., Jigisha, J., Menardo, F., Wicker, T., Mueller, M. C., Keller, B.

Date: 2025-10-30 · Version: 2
DOI: 10.1101/2025.10.26.683672

Category: Plant Biology

Model Organism: Triticum aestivum (wheat)

AI Summary

The study investigates the wheat Pm3 NLR allelic series, revealing that near-identical Pm3d and Pm3e alleles confer broad-spectrum resistance by recognizing multiple, structurally diverse powdery mildew effectors. Using chimeric NLR constructs, the authors pinpoint specificity-determining polymorphisms and demonstrate that engineered combinations of Pm3d and Pm3e further expand effector recognition, showcasing the potential for durable wheat protection through NLR engineering.

broad-spectrum resistance NLR receptors Pm3 alleles powdery mildew effectors wheat

Regenerative agriculture effects on biomass, drought resilience and 14C-photosynthate allocation in wheat drilled into ley compared to disc or ploughed arable soil

Authors: Austen, N., Short, E., Tille, S., Johnson, I., Summers, R., Cameron, D. D., Leake, J. R.

Date: 2025-09-07 · Version: 1
DOI: 10.1101/2025.09.04.674292

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

Regenerative agriculture using a grass-clover ley increased wheat yields and macroaggregate stability despite reduced root biomass, but did not enhance soil carbon sequestration as measured by 14C retention. Drought further decreased photosynthate allocation to roots, especially in ley soils, while genotype effects on yield were minimal.

regenerative agriculture soil macroaggregation wheat 14C pulse labeling drought resilience

Soil phosphate availability modulates the arbuscular mycorrhizal fungal community and mycorrhizal nutrition in wheat

Authors: Trinquier, M., Lecloux, E., Bruno, P., Gasciolli, V., Jouany, C., Roux, C., Lefebvre, B., Ardanuy, A.

Date: 2025-08-09 · Version: 1
DOI: 10.1101/2025.08.08.669323

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study examined how soil phosphorus and nitrogen availability influence wheat root-associated arbuscular mycorrhizal fungal (AMF) communities and the expression of mycorrhizal nutrient transporters. Field sampling across two years combined with controlled pot experiments showed that P and N jointly affect AMF colonisation, community composition (with Funneliformis dominance under high P), and regulation of phosphate, ammonium, and nitrate transporters. Integrating metabarcoding and RT‑qPCR provides a framework to assess AMF contributions to crop nutrition.

arbuscular mycorrhizal fungi phosphorus availability nitrogen availability wheat metabarcoding

An aphid resistant wheat variety reduces the transmission of Barley Yellow Dwarf Virus (BYDV) by Rhopalosiphum padi (L.)

Authors: Qonaah, I. A., Simon, A. L., Warner, D., Bruce, T. J. A., Ray, R. V.

Date: 2025-08-02 · Version: 1
DOI: 10.1101/2025.07.30.667415

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study compared aphid resistance and Barley Yellow Dwarf Virus (BYDV) transmission among three wheat varieties (G1, RGT Wolverine, RGT Illustrious). G1 emits the repellent 2‑tridecanone, restricts aphid phloem access, and shows reduced BYDV transmission, whereas RGT Wolverine limits systemic viral infection despite high transmission efficiency. The authors suggest breeding the two resistance mechanisms together for improved protection.

aphid resistance Barley Yellow Dwarf Virus wheat 2‑tridecanone virus transmission

Heat Stress and Soil Microbial Disturbance Influence Soybean Root Metabolite, Microbiome Profiles, and Nodulation

Authors: Elango, D., Van der Laan, L., Gholizadeh, S., Premarathne, M. D. G. P., Dutter, C. R., DePew, C., McDaniel, M., Singh, A. K.

Date: 2025-07-14 · Version: 1
DOI: 10.1101/2025.07.13.664636

Category: Plant Biology

Model Organism: Glycine max

AI Summary

The study investigated how native soil microbes affect heat tolerance in soybean (Glycine max) by comparing plants grown in natural versus microbiome‑disturbed soils under optimal and elevated temperatures. Using 16S rRNA and ITS sequencing alongside non‑targeted root metabolomics, the authors found significant shifts in bacterial and fungal communities, suppressed nodule‑forming bacteria, and altered root metabolites that correlated with reduced nodulation efficiency under heat stress. Integrated multi‑omics analyses linked microbial composition to metabolite profiles and nitrogen‑fixation traits, highlighting a coordinated response of the root physiological system to combined heat and microbiome perturbations.

heat stress rhizosphere microbiome soybean root metabolomics nitrogen fixation

Homoeolog expression in polyploid wheat mutants shows limited transcriptional compensation

Authors: Dorussen, D., Knight, E., Simmonds, J., Borrill, P.

Date: 2025-07-02 · Version: 1
DOI: 10.1101/2025.07.01.662569

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study investigated whether wheat homoeologous genes actively compensate for each other when one copy acquires a premature termination codon (PTC) mutation. By analyzing mutagenised wheat lines, the authors found that only about 3% of cases exhibited upregulation of the unaffected homoeolog, indicating that widespread active transcriptional compensation is absent in wheat.

transcriptional compensation homoeologs premature termination codon wheat mutagenised lines
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