Keywords: paralog processing, CO2 enrichment, CO2-fixing enzyme, introgression, polyploidy

Latest 11 Papers

Chromosomal evolution and polyploidy dynamics in tribe Andropogoneae (Poaceae: Panicoideae): insights from phylogenomic reconstruction

Authors: Bispo, A. T. H., Silva, C., Welker, C. A. D.

Date: 2025-12-11 · Version: 1

DOI: 10.64898/2025.12.09.693223

Model Organism: General

chromosomal evolution Andropogoneae plastome sequencing Bayesian inference polyploidy

The origins and adaptive consequences of polyploidy in a dominant prairie grass

Authors: Phillips, A. R., AuBuchon-Elder, T., Barry, K. W., Stitzer, M. C., Buckler, E. S., Bukowski, R., Cameron, B., Cryan, E., Forrestel, E., Grabowski, P. P., Grimwood, J., Jenkins, J. W., Shu, S., Lipzen, A., Lovell, J. T., Minx, P., Porter, J., Runcie, D. E., Schmutz, J., Solomon, B., Stephens, J., Sun, Q., Williams, M., Yoshinaga, Y., Flint-Garcia, S., Romay, C., Kellogg, E. A., Ross-Ibarra, J.

Date: 2025-11-25 · Version: 1

DOI: 10.1101/2025.11.25.690567

Model Organism: Andropogon gerardi

polyploidy whole genome duplication Andropogon gerardi neopolyploid xeric adaptation

Rubisco Dark Inhibition in Angiosperms Shows a Complex Distribution Pattern

Authors: Nehls-Ramos, C., Carmo-Silva, E., Orr, D. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.20.689527

Model Organism: Multi-species

Rubisco dark inhibition flowering plants phylogenetic analysis photosynthetic regulation CO2-fixing enzyme

Leveraging Crop Wild Relatives and Ploidy Level for Climate-Resilient Annual Ryegrass

Authors: Mailhos, M. E., Timmers, J., Erickson, J., Caram, N., Messina, C. D., Rios, E. F.

Date: 2025-10-18 · Version: 1

DOI: 10.1101/2025.10.15.682691

Model Organism: Lolium multiflorum

polyploidy climate change Lolium multiflorum CO2 enrichment evapotranspiration

High-Quality Draft Genome Assemblies and Comparative Genomics of Three Bouteloua Species (Poaceae: Chloridoideae)

Authors: Ganesan, M. A., Hale, C. O., Romay, M. C., Buckler, E. S., Stitzer, M. C.

Date: 2025-10-17 · Version: 1

DOI: 10.1101/2025.10.15.682643

Model Organism: Multi-species

Bouteloua PacBio HiFi genome assembly polyploidy transposable elements

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Apomixis frequency in polyploid wild populations of Psidium cattleyanum f. lucidum (Myrteae, Myrtaceae)

Authors: Souza-Perez, M., Machado, R. M., Vaio, M., Borges, A., Hormaza, J. I., Speroni, G.

Date: 2025-08-22 · Version: 1

DOI: 10.1101/2025.08.18.670884

Model Organism: Psidium cattleyanum

apomixis polyploidy flow cytometric seed screen microsatellite genotyping population genetic structure

Micro-Mel and Mini-Mel short life cycle dwarf lines with Solanum anguivi introgressions as the first model varieties for eggplant research and breeding

Authors: Martinez-Lopez, M., Baraja-Fonseca, V., Garcia-Fortea, E., Plazas, M., Vilanova, S., Prohens, J., Gramazio, P.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.07.642017

Model Organism: Solanum melongena

Solanum melongena dwarf model lines introgression whole‑genome sequencing rapid‑cycling

Population-scale gene expression analysis reveals the contribution of expression diversity to the modern wheat improvement

Authors: Zhang, Z., Ma, S., Yin, M., Zhao, C., Zhao, X., yu, Y., Wang, H., Li, X., Si, Y., Niu, J., Xie, J., Wang, L., Wu, J., Zhang, Y., Zheng, Q., Zheng, S., Jiang, N., Liu, X., Ling, H.-Q., He, F.

Date: 2025-02-23 · Version: 1

DOI: 10.1101/2025.02.18.638840

Model Organism: Triticum aestivum

gene expression variation pan‑genome eQTL analysis introgression wheat

The dynamics of ACR and DNA methylation impact asymmetric subgenome dominance in allotriploid Brassica species

Authors: dai, c., Dou, S., quan, c.

Date: 2025-02-20 · Version: 1

DOI: 10.1101/2025.02.16.638486

Model Organism: Brassica napus

polyploidy subgenome dominance accessible chromatin regions DNA methylation Brassica allotriploids

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