Keywords: paralog processing, CO2 enrichment, ascorbate, codon usage, transcriptome, gene expression, Tomato

Latest 16 Papers

Genome-wide Identification of the Laccase Gene Family in White Jute (Corchorus capsularis): Potential Targets for Lignin Engineering in Bast Fiber

Authors: Parida, S., Jha, D. K., Kumari, K., Pradhan, S., Dey, N., Majumder, S.

Date: 2025-12-29 · Version: 3

DOI: 10.1101/2024.07.17.603856

Model Organism: Corchorus capsularis

laccase lignification Corchorus capsularis gene expression microRNA regulation

Both conventionally and organically fertilized tomatoes maintain fruit quality through uncontrolled green peach aphid infestation, with a transcriptional shift towards catabolism

Authors: Labbancz, J., Gustafson, L., Andrews, P., Dhingra, A.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.14.694237

Model Organism: Solanum lycopersicum

Tomato Aphid infestation Organic fertilizer Transcriptome WGCNA co‑expression network

Leveraging Crop Wild Relatives and Ploidy Level for Climate-Resilient Annual Ryegrass

Authors: Mailhos, M. E., Timmers, J., Erickson, J., Caram, N., Messina, C. D., Rios, E. F.

Date: 2025-10-18 · Version: 1

DOI: 10.1101/2025.10.15.682691

Model Organism: Lolium multiflorum

polyploidy climate change Lolium multiflorum CO2 enrichment evapotranspiration

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Phosphoinositide-specific Phospholipase C 2 (SlPLC2) Facilitates Vesicle Formation and Modulates Immune Signaling in Tomato Phytophthora infestans Interactions

Authors: Perk, E. A., D'Ambrosio, J. M., Cerrudo, I., Robuschi, L., Juarez, M., Velez, P., Mary, V., Theumer, M., Segretin, M. E., Laxalt, A. M.

Date: 2025-09-21 · Version: 1

DOI: 10.1101/2025.09.21.677499

Model Organism: Solanum lycopersicum

Phosphoinositide-specific phospholipase C SlPLC2 Phytophthora infestans Tomato susceptibility factor

Impact of elevated temperature on immunity-related hormone signaling in tomato plants

Authors: Liu, K., Shivnauth, V., Castroverde, C. D. M.

Date: 2025-07-23 · Version: 1

DOI: 10.1101/2025.07.20.665745

Model Organism: Solanum lycopersicum

Tomato Pseudomonas syringae pv. tomato temperature effects defence hormone pathways gene expression

Transcriptomic prey-capture responses in convergently evolved carnivorous pitcher plants

Authors: Wakatake, T., Fukushima, K.

Date: 2025-07-18 · Version: 1

DOI: 10.1101/2025.07.16.665073

Model Organism: Cephalotus follicularis

convergent evolution pitcher plant RNA‑seq gene expression digestive enzymes

Fragaria ananassa DAM4 expression correlates with vegetative growth during endodormancy breaking

Authors: David, S., Kersten, P., Cao, X., Marcelis, L. F. M., Verdonk, J. C.

Date: 2025-07-15 · Version: 1

DOI: 10.1101/2025.07.10.664089

Model Organism: Fragaria × ananassa

DAM3 DAM4 winter dormancy Fragaria × ananassa gene expression

An extended β-finger motif is a near-universal feature of kinase fusion proteins

Authors: Powell, O. R., Gilbert, D., Wulff, B. B. H.

Date: 2025-07-14 · Version: 1

DOI: 10.1101/2025.07.14.664643

Model Organism: Multi-species

kinase fusion proteins β‑finger motif Poaceae disease resistance gene expression

Tomato leaf transcriptomic changes promoted by long-term water scarcity stress can be largely prevented by a fungal-based biostimulant

Authors: Lopez-Serrano, L., Ferez-Gomez, A., Romero-Aranda, R., Jaime Fernandez, E., Leal Lopez, J., Fernandez Baroja, E., Almagro, G., Dolezal, K., Novak, O., Diaz, L., Bautista, R., Leon Morcillo, R. J., Pozueta Romero, J.

Date: 2025-06-28 · Version: 1

DOI: 10.1101/2025.06.26.661737

Model Organism: Solanum lycopersicum

water deficit Trichoderma harzianum culture filtrate tomato drought tolerance transcriptome

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