Keywords: paralog processing, CO2 enrichment, ascorbate, introgression, SNP markers

Latest 9 Papers

Leveraging Crop Wild Relatives and Ploidy Level for Climate-Resilient Annual Ryegrass

Authors: Mailhos, M. E., Timmers, J., Erickson, J., Caram, N., Messina, C. D., Rios, E. F.

Date: 2025-10-18 · Version: 1

DOI: 10.1101/2025.10.15.682691

Model Organism: Lolium multiflorum

polyploidy climate change Lolium multiflorum CO2 enrichment evapotranspiration

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Genomic prediction of disease resistance provides a path to marker assisted restoration in a wetland foundation tree species

Authors: Guo, K., Ahrens, C. W., Chen, S. H., Sandhu, K., Rossetto, M., Jones, A., Tan, C., Borevitz, J. O., Edwards, R. J., Bragg, J. G.

Date: 2025-09-17 · Version: 1

DOI: 10.1101/2025.09.14.675737

Model Organism: Melaleuca quinquenervia

myrtle rust Melaleuca quinquenervia Genome Wide Association Study disease resistance SNP markers

Predicting flowering time using integrated morphophysiological and genomic data with machine learning models

Authors: Babaei, M., Nemati, H., Arouiee, H., Torkamaneh, D.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.11.669697

Model Organism: Cannabis sativa

flowering time Cannabis sativa genotyping-by-sequencing machine learning SNP markers

Whole genome sequencing-based multi-locus association mapping for kernel iron, zinc and protein content in groundnut

Authors: Sagar, U. N., Parmar, S., Gangurde, S. S., Sharma, V., Pandey, A. K., Mohinuddin, D. K., Dube, N., Bhat, R. S., John, K., Sreevalli, M. D., Rani, P. S., Singh, K., Varshney, R. K., Pandey, M. K.

Date: 2025-08-05 · Version: 1

DOI: 10.1101/2025.08.04.668427

Model Organism: Arachis hypogaea

groundnut nutritional quality GWAS SNP markers KASP

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Omics-driven Identification of Candidate Genes and SNP markers in a Major QTL Controlling Early Heading in Rice

Authors: Rao, D., T, N. S., CG, G., Gaur, N., Jamaloddin, M., Maganti, S. M., Raman, M. S., Patel, H. K., Tiwari, S., Sonti, R. V.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.25.645207

Model Organism: Oryza sativa

heading date rice (Oryza sativa)QTL-seq SNP markers transcriptomics

Micro-Mel and Mini-Mel short life cycle dwarf lines with Solanum anguivi introgressions as the first model varieties for eggplant research and breeding

Authors: Martinez-Lopez, M., Baraja-Fonseca, V., Garcia-Fortea, E., Plazas, M., Vilanova, S., Prohens, J., Gramazio, P.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.07.642017

Model Organism: Solanum melongena

Solanum melongena dwarf model lines introgression whole‑genome sequencing rapid‑cycling

Population-scale gene expression analysis reveals the contribution of expression diversity to the modern wheat improvement

Authors: Zhang, Z., Ma, S., Yin, M., Zhao, C., Zhao, X., yu, Y., Wang, H., Li, X., Si, Y., Niu, J., Xie, J., Wang, L., Wu, J., Zhang, Y., Zheng, Q., Zheng, S., Jiang, N., Liu, X., Ling, H.-Q., He, F.

Date: 2025-02-23 · Version: 1

DOI: 10.1101/2025.02.18.638840

Model Organism: Triticum aestivum

gene expression variation pan‑genome eQTL analysis introgression wheat