Keywords: paralog processing, CO2 enrichment, deep learning, calcium signaling

Latest 26 Papers

Ca2+ signature-dependent control of auxin sensitivity in Arabidopsis

Authors: Song, H., Baudon, A., Freund, M., Randuch, M., Pencik, A., Ondrej, N., He, Z., Kaufmann, K., Gilliham, M., Friml, J., Hedrich, R., Huang, S.

Date: 2025-10-05 · Version: 1

DOI: 10.1101/2025.10.04.680446

Model Organism: Arabidopsis thaliana

auxin signaling calcium signaling optogenetics Arabidopsis root cell division inhibition

Botanic Spectrum Analyser: A Deep Learning GUI for Plant Image Segmentation in Hyperspectral and RGB Phenotyping

Authors: Walsh, J. J., Gorgu, L., Cavel, E., Poulain, V., Gutierrez, L., Mangina, E., Negrao, S.

Date: 2025-09-17 · Version: 1

DOI: 10.1101/2025.09.14.676080

Model Organism: Multi-species

plant phenotyping image segmentation U‑Net hyperspectral imaging deep learning

Jasmonate Primes Plant Responses to Extracellular ATP through Purinoceptor P2K1

Authors: Jewell, J. B., Carlton, A., Tolley, J. P., Bartley, L. E., Tanaka, K.

Date: 2025-08-12 · Version: 2

DOI: 10.1101/2024.11.07.622526

Model Organism: Arabidopsis thaliana

extracellular ATP jasmonate signaling P2K1 receptor COI1 calcium signaling

The Rapid Mechanically Activated (RMA) channel transduces increases in plasma membrane tension into transient calcium influx

Authors: Guerringue, Y., Thomine, S., Allain, J.-M., Frachisse, J.-M.

Date: 2025-08-07 · Version: 1

DOI: 10.1101/2025.08.06.668926

Model Organism: General

mechanically activated calcium channel RMA channel calcium signaling high‑frequency mechanical stimulation kinetic modeling

Phenotypic scoring of Canola Blackleg severity using machine learning image analysis

Authors: Hu, Q., Anderson, S. N., Gardner, S., Ernst, T. W., Koscielny, C. B., Bahia, N. S., Johnson, C. G., Jarvis, A. C., Hynek, J., Coles, N., Falak, I., Charne, D. R., Ruidiaz, M. E., Linares, J. N., Mazis, A., Stanton, D. J.

Date: 2025-07-22 · Version: 1

DOI: 10.1101/2025.07.17.665372

Model Organism: Multi-species

blackleg disease canola (Brassica spp.)deep learning image-based phenotyping disease severity scoring

RegenPGC View: Semantic Segmentation of Perennial Groundcover Cropping Systems to Restore American Croplands

Authors: Meyering, B., Schlautman, B.

Date: 2025-07-06 · Version: 1

DOI: 10.1101/2025.07.03.663038

Model Organism: General

perennial groundcovers cover cropping deep learning convolutional neural network image‑based phenotyping

Single-cell-resolved calcium and organelle dynamics in resistosome-mediated cell death

Authors: Chen, Y.-F., Lin, K.-Y., Huang, C.-Y., Hou, L.-Y., Yuen, E. L. H., Sun, W.-C. J., Chiang, B.-J., Chang, C.-W., Wang, H.-Y., Bozkurt, T. O., Wu, C.-H.

Date: 2025-07-01 · Version: 1

DOI: 10.1101/2025.06.27.662017

Model Organism: Multi-species

NLR resistosome calcium signaling organelle disruption cell death cascade plant immunity

The CATION CALCIUM EXCHANGER 4 (CCX4) regulates LRX1-related root hair development through Ca2+ homeostasis

Authors: Hou, X., Tortora, G., Herger, A., Buratti, S., Dobrev, P. I., Vaculikov, R., Lacek, J., Sotiropoulos, A. G., Kadler, G., Schaufelberger, M., Candeo, A., Bassi, A., Wicker, T., Costa, A., Ringli, C.

Date: 2025-06-27 · Version: 1

DOI: 10.1101/2025.06.25.660713

Model Organism: Arabidopsis thaliana

calcium signaling root hair development LRX1 extensin domain CCX4 Golgi transporter Ca2+ homeostasis

Unraveling the cis-regulatory code controlling abscisic acid-dependent gene expression in Arabidopsis using deep learning

Authors: Opdebeeck, H., Smet, D., Thierens, S., Minne, M., De Beukelaer, H., Zuallaert, J., Van Bel, M., Van Montagu, M., Degroeve, S., De Rybel, B., Vandepoele, K.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657584

Model Organism: Arabidopsis thaliana

Abscisic acid Arabidopsis thaliana deep learning promoter motifs ABF binding sites

Thermotolerance in Chia (Salvia hispanica L.) is Mediated by Rapid Heat-Induced Transcriptomic Reprogramming and Lipid Remodelling in Leaves

Authors: Zare, T., Kehelpannala, C., Bhatnagar, A., Rupasinghe, T., Ebert, B., Fournier-Level, A., Roessner, U.

Date: 2025-06-02 · Version: 1

DOI: 10.1101/2025.05.30.656991

Model Organism: Salvia hispanica

heat stress Salvia hispanica transcriptomics lipidomics calcium signaling

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