Keywords: paralog processing, CO2-fixing enzyme, CO2 enrichment, deep learning, ascorbate, tomato

Latest 34 Papers

Hyperspectral Imaging to Quantify Nodules and Detect Biological Nitrogen Fixation in Legumes

Authors: Wang, Y., de Silva, K., Song, D., Kamruzzaman, M., Brooks, M. D.

Date: 2025-10-24 · Version: 3

DOI: 10.1101/2025.07.25.666867

Model Organism: Multi-species

root nodules biological nitrogen fixation hyperspectral imaging deep learning legume species

Leveraging Crop Wild Relatives and Ploidy Level for Climate-Resilient Annual Ryegrass

Authors: Mailhos, M. E., Timmers, J., Erickson, J., Caram, N., Messina, C. D., Rios, E. F.

Date: 2025-10-18 · Version: 1

DOI: 10.1101/2025.10.15.682691

Model Organism: Lolium multiflorum

polyploidy climate change Lolium multiflorum CO2 enrichment evapotranspiration

Discovery of tomato UDP-glucosyltransferases involved in bioactive jasmonate homeostasis using limited proteolysis-coupled mass spectrometry

Authors: Venegas-Molina, J., Mohnike, L., Selma Garcia, S., Janssens, H., Colembie, R., Kimpe, I., Jaramillo-Madrid, A. C., Lacchini, E., Winne, J. M., Van Damme, P., Feussner, I., Goossens, A., Sola, K.

Date: 2025-10-15 · Version: 1

DOI: 10.1101/2025.10.15.682356

Model Organism: Solanum lycopersicum

jasmonic acid limited proteolysis‑coupled mass spectrometry UDP‑glucuronosyltransferase JA catabolism tomato

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Mammalian growth-regulating factors enhance regeneration of recalcitrant transgenic tomato accessions

Authors: Garchery, C., Benejam, J., Grau, A., Gricourt, J., Pelpoir, E., Causse, M.

Date: 2025-09-29 · Version: 1

DOI: 10.1101/2025.09.25.678568

Model Organism: Solanum lycopersicum

CRISPR-Cas9 plant regeneration mammalian growth factors cytokines tomato

SlATG8f enhances tomato thermotolerance and fruit quality via autophagy and HS pathways

Authors: Cheng, q., Xu, w., wen, c., He, Z., Song, L.

Date: 2025-09-25 · Version: 1

DOI: 10.1101/2025.09.23.678159

Model Organism: Solanum lycopersicum

SlATG8f autophagy high-temperature stress tomato fruit quality

Repressed expression of nucleoporins and importins impairs plant defense against an infectious noncoding RNA

Authors: Wang, Y., Fang, Y., Merritt, B. A., Liu, B., Gu, Y., Mou, Z., Wang, Y., Hao, J.

Date: 2025-09-21 · Version: 1

DOI: 10.1101/2025.09.19.677415

Model Organism: Solanum lycopersicum

viroid nucleoporins NPR1 salicylic acid analog tomato

Botanic Spectrum Analyser: A Deep Learning GUI for Plant Image Segmentation in Hyperspectral and RGB Phenotyping

Authors: Walsh, J. J., Gorgu, L., Cavel, E., Poulain, V., Gutierrez, L., Mangina, E., Negrao, S.

Date: 2025-09-17 · Version: 1

DOI: 10.1101/2025.09.14.676080

Model Organism: Multi-species

plant phenotyping image segmentation U‑Net hyperspectral imaging deep learning

Pseudomonas aeruginosa SPT08, a tomato endophyte, improves plant growth and controls bacterial wilt in tomato

Authors: Giri, S. J., Rana, R., Sharma, P. L., Begum, S., Dutta, L., Kalita, S., Bhuyan, S., Jain, M., Agarwala, N., Patil, P. B., Ray, S. K.

Date: 2025-08-20 · Version: 1

DOI: 10.1101/2025.08.17.670768

Model Organism: Solanum lycopersicum

Pseudomonas aeruginosa tomato bacterial wilt endophyte plant growth promotion

Phenotypic scoring of Canola Blackleg severity using machine learning image analysis

Authors: Hu, Q., Anderson, S. N., Gardner, S., Ernst, T. W., Koscielny, C. B., Bahia, N. S., Johnson, C. G., Jarvis, A. C., Hynek, J., Coles, N., Falak, I., Charne, D. R., Ruidiaz, M. E., Linares, J. N., Mazis, A., Stanton, D. J.

Date: 2025-07-22 · Version: 1

DOI: 10.1101/2025.07.17.665372

Model Organism: Multi-species

blackleg disease canola (Brassica spp.)deep learning image-based phenotyping disease severity scoring

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