Keywords: paralog processing, CO2-fixing enzyme, comparative transcriptomics, phylogenetic analysis, SUMOylation

Latest 32 Papers

Network analysis of flowering time genes suggests regulatory changes among SOC1 orthologues in response to cold in Brassica napus

Authors: Sidhu, G. S., Burrows, S., Woolfenden, H., Wells, R., Morris, R. J.

Date: 2026-01-20 · Version: 2

DOI: 10.64898/2025.12.16.694548

Model Organism: Brassica napus

flowering time gene regulatory network comparative transcriptomics Brassica napus subfunctionalisation

Membrane-binding domains define REMORIN phylogeny and provide a predicted structural basis for distinctive membrane nano-environments

Authors: Biermann, D., Gronnier, J.

Date: 2025-12-23 · Version: 1

DOI: 10.64898/2025.12.22.695504

Model Organism: General

REMORIN proteins C-terminal domain membrane nano-organization phylogenetic analysis structural bioinformatics

CHLOROPLAST GENOME AND PHYLOGENETIC ANALYSIS OF KATMON (Dillenia philippinensis Rolfe), A PHILIPPINE ENDEMIC FRUIT

Authors: Lucero, J. J. M., Munoz, J. A. M., Aglibot, L. Y., Cardona, D. E. M., Gueco, L. S., Manalang, A. P., Villanueva, J. C., Alonday, R. C. S.

Date: 2025-11-27 · Version: 1

DOI: 10.1101/2025.11.26.690882

Model Organism: Dillenia philippinensis

Dillenia philippinensis chloroplast genome Illumina NovaSeqX phylogenetic analysis simple sequence repeats

Rubisco Dark Inhibition in Angiosperms Shows a Complex Distribution Pattern

Authors: Nehls-Ramos, C., Carmo-Silva, E., Orr, D. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.20.689527

Model Organism: Multi-species

Rubisco dark inhibition flowering plants phylogenetic analysis photosynthetic regulation CO2-fixing enzyme

Antirrhinum flower shape: unravelling gene expression across developmental axes and boundaries

Authors: Cunha, A. M., Raimundo, J., Verweij, A., Bradley, D., Coen, E., Costa, M. M. R.

Date: 2025-11-11 · Version: 1

DOI: 10.1101/2025.11.10.687484

Model Organism: Antirrhinum majus

Antirrhinum majus dorsoventral axis patterning comparative transcriptomics AmCYC/AmDIV transcription factors NGATHA‑LIKE1‑miR164 regulatory module

Symbiotic diversification relies on an ancestral gene network in plants

Authors: Castanedo, L., Melkonian, K., Vernie, T., Chauderon, L., Pellen, T., Bianconi, M., Lefort, C., Libourel, C., Le Ru, A., Aziz, S., Latorre, C., Thiercelin, O., Rodde, N., Cauet, S., Callot, C., Forrest, L., Nishiyama, T., Wickell, D., Li, F.-W., Keller, J., Delaux, P.-M.

Date: 2025-11-03 · Version: 2

DOI: 10.1101/2025.04.01.646537

Model Organism: Marchantia paleacea

ericoid mycorrhizae intracellular symbiosis ancestral gene module liverwort comparative transcriptomics

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Six New Species and Two Reinstatements of Viola (Violaceae) from China

Authors: Huang, Y., Fan, Q.

Date: 2025-10-03 · Version: 1

DOI: 10.1101/2025.10.02.679011

Model Organism: Viola

Viola new species phylogenetic analysis ITS GPI

Wounding activates the HSFA1 transcription factors to promote cellular reprogramming in Arabidopsis

Authors: Coleman, D., Iwase, A., Kawamura, A., Takebayashi, A., Jaeger, K. E., Peng, M., Kodama, Y., Favero, D. S., Takahashi, T., Ikeuchi, M., Suzuki, T., Ohama, N., Yamaguchi-Shinozaki, K., Wigge, P. A., De Veylder, L., Sugimoto, K.

Date: 2025-09-30 · Version: 1

DOI: 10.1101/2025.09.29.679115

Model Organism: Arabidopsis thaliana

HSFA1 transcription factors wound-induced regeneration callus formation RNA-seq SUMOylation

Genome-wide Identification, Structural Features and Single-Cell Expression Atlas of the Carbonic Anhydrase Gene Family in Maize (Zea mays L.)

Authors: Gao, Y., Zhao, C.

Date: 2025-09-21 · Version: 1

DOI: 10.1101/2025.09.21.677582

Model Organism: Zea mays

carbonic anhydrases maize single-cell RNA‑seq phylogenetic analysis stress resilience

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