Keywords: paralog processing, CO2-fixing enzyme, maize, DDM1, ascorbate

Latest 12 Papers

Effects of atmospheric CO2 levels on the susceptibility of maize to diverse pathogens

Authors: Khwanbua, E., Qi, Y., Ssengo, J., Liu, P., Graham, M. A., Whitham, S.

Date: 2026-01-02 · Version: 1

DOI: 10.64898/2025.12.31.697224

Model Organism: Zea mays

elevated CO₂ maize plant immunity pathogen susceptibility C4 crops

Rubisco Dark Inhibition in Angiosperms Shows a Complex Distribution Pattern

Authors: Nehls-Ramos, C., Carmo-Silva, E., Orr, D. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.20.689527

Model Organism: Multi-species

Rubisco dark inhibition flowering plants phylogenetic analysis photosynthetic regulation CO2-fixing enzyme

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Genome-wide Identification, Structural Features and Single-Cell Expression Atlas of the Carbonic Anhydrase Gene Family in Maize (Zea mays L.)

Authors: Gao, Y., Zhao, C.

Date: 2025-09-21 · Version: 1

DOI: 10.1101/2025.09.21.677582

Model Organism: Zea mays

carbonic anhydrases maize single-cell RNA‑seq phylogenetic analysis stress resilience

Major alleles of CDCA7α shape CG-methylation in Arabidopsis thaliana

Authors: Bourguet, P., Lorkovic, Z. J., Casado, D. K., Bapteste, V., Cho, C. H., Igolkina, A., Lee, C.-R., Nordborg, M., Berger, F., Sasaki, E.

Date: 2025-09-07 · Version: 1

DOI: 10.1101/2025.09.03.673934

Model Organism: Arabidopsis thaliana

DNA methylation CG methylation (mCG)CDCA7 DDM1 local adaptation

DECREASE IN DNA METHYLATION 1-mediated epigenetic regulation maintains gene expression balance required for heterosis in Arabidopsis thaliana

Authors: Matsuo, K., Wu, R., Yonechi, H., Murakami, T., Takahashi, S., Kamio, A., Akter, M. A., Kamiya, Y., Nishimura, K., Matsuura, T., Tonosaki, K., Shimizu, M., Ikeda, Y., Kobayashi, H., Seki, M., Dennis, E. S., Fujimoto, R.

Date: 2025-08-26 · Version: 1

DOI: 10.1101/2025.08.21.671646

Model Organism: Arabidopsis thaliana

heterosis DNA methylation DDM1 Arabidopsis thaliana transcriptomics

Optimizing population simulations to accurately parallel empirical data for digital breeding

Authors: Burns, M. J., Della Coletta, R., Fernandes, S. B., Bohn, M. O., Lipka, A. E., Hirsch, C. N.

Date: 2025-06-24 · Version: 1

DOI: 10.1101/2025.06.18.660215

Model Organism: Zea mays

digital breeding GWAS-informed simulation maize phenotypic prediction genomic prediction

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Untargeted metabolomics reveals key metabolites and genes underlying salinity tolerance mechanisms in maize

Authors: Brar, M. S., De Souza, A., Ghai, A., Ferreira, J. F. S., Sandhu, D., Sekhon, R.

Date: 2025-04-14 · Version: 1

DOI: 10.1101/2025.04.08.647850

Model Organism: Zea mays

salt tolerance maize untargeted metabolomics flavonoids candidate genes

A reaction norm for flowering time plasticity reveals physiological footprints of maize adaptation

Authors: Drouault, J., Palaffre, C., Millet, E. J., Rodriguez, J., Martre, P., Johnson, K., Parent, B., Welcker, C., Wisser, R. J.

Date: 2025-04-10 · Version: 4

DOI: 10.1101/2024.07.10.602692

Model Organism: Zea mays

flowering time genotype-by-environment interaction photoperiod perception plasticity maize

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