Keywords: paralog processing, CO2-fixing enzyme, proteomics, image-based phenotyping

Latest 22 Papers

Ca2+-driven nanodomain enrichment and plasma membrane proteome remodelling enable bacterial outer membrane vesicle perception in rice

Authors: Mondal, I., Das, H., Behera, S.

Date: 2025-12-02 · Version: 2

DOI: 10.1101/2025.09.17.676730

Model Organism: Oryza sativa

Xanthomonas oryzae pv. oryzae outer membrane vesicles calcium signaling plasma membrane nanodomains proteomics

Chloroplast-mitochondria synergy modulates responses to iron limitation in two Thalassiosira diatom species

Authors: ANGULO, J., Uwizeye, C., Albanese, P., Menneteau, M., Ravanel, S., Jouneau, P.-H., Finazzi, G., Courtois, F.

Date: 2025-11-29 · Version: 1

DOI: 10.1101/2025.11.28.691171

Model Organism: Thalassiosira oceanica; Thalassiosira pseudonana

iron limitation diatoms Thalassiosira chloroplast-mitochondrial coupling proteomics

CLPC2 plays specific roles in CLP complex-mediated regulation of growth, photosynthesis, embryogenesis and response to growth-promoting microbial compounds

Authors: Leal-Lopez, J., Bahaji, A., De Diego, N., Tarkowski, P., Baroja-Fernandez, E., Munoz, F. J., Almagro, G., Perez, C. E., Bastidas-Parrado, L. A., Loperfido, D., Caporalli, E., Ezquer, I., Lopez-Serrano, L., Ferez-Gomez, A., Coca-Ruiz, V., Pulido, P., Morcillo, R. J. L., Pozueta-Romero, J.

Date: 2025-11-28 · Version: 1

DOI: 10.1101/2025.11.25.690394

Model Organism: Arabidopsis thaliana

CLPC2 microbial volatile compounds chloroplast CLP protease proteomics Arabidopsis thaliana

Rubisco Dark Inhibition in Angiosperms Shows a Complex Distribution Pattern

Authors: Nehls-Ramos, C., Carmo-Silva, E., Orr, D. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.20.689527

Model Organism: Multi-species

Rubisco dark inhibition flowering plants phylogenetic analysis photosynthetic regulation CO2-fixing enzyme

PlantCV v4: Image analysis software for high-throughput plant phenotyping

Authors: Schuhl, H., Brown, K. E., Sheng, H., Bhatt, P. K., Gutierrez, J., Schneider, D., Casto, A. L., Acosta-Gamboa, L., Ballenger, J. G., Barbero, F., Braley, J., Brown, A. M., Chavez, L., Cunningham, S., Dilhara, M., Dimech, A. M., Duenwald, J. G., Fischer, A., Gordon, J. M., Hendrikse, C., Hernandez, G. L., Hodge, J. G., Huber, M., Hurr, B. M., Jarolmasjed, S., Medina Jimenez, K., Kenney, S., Konkel, G., Kutschera, A., Lama, S., Lohbihler, M., Lorence, A., Luebbert, C., Ly, N., Manching, H. K., Marrano, A., Meerdink, S., Miklave, N. M., Mudrageda, P., Murphy, K. M., Peery, J. D., Pierik, R., Polyd

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.19.689271

Model Organism: General

PlantCV image-based phenotyping fluorescence imaging thermal imaging hyperspectral imaging

Barley (Hordeum vulgare) maintains tricarboxylic acid cycle activity without invoking the GABA shunt under salt stress

Authors: Bandehagh, A., Taylor, N. L.

Date: 2025-11-08 · Version: 1

DOI: 10.1101/2025.11.06.687118

Model Organism: Hordeum vulgare

salinity stress mitochondrial respiration tricarboxylic acid cycle metabolomics proteomics

Integrating image-based phenotyping and GWAS to map tolerance to Spittlebug nymphs in interspecific Urochloa grasses

Authors: Espitia-Buitrago, P., Perea, C., Mejia-Medina, J. C., Hernandez, L. M., Castiblanco, V., Ryan, C., De Vega, J. J., Jauregui, R. N.

Date: 2025-11-05 · Version: 1

DOI: 10.1101/2025.11.03.686394

Model Organism: Urochloa spp.

Urochloa spittlebug tolerance GWAS QTL image-based phenotyping

Guard Cell-Enriched Phosphoproteome Reveals Phosphorylation of Endomembrane Proteins in Closed Stomata

Authors: Pullen, A.-M., Lyons, S., Mordant, A., Herring, L. E., Akpa, B., Rojas-Pierce, M.

Date: 2025-10-15 · Version: 1

DOI: 10.1101/2025.10.15.682613

Model Organism: General

stomatal aperture guard cells phosphorylation endomembrane trafficking proteomics

Uncovering the Molecular Regulation of Seed Development and Germination in Endangered Legume Paubrasilia echinata Through Proteomic and Polyamine Analyses

Authors: Vettorazzi, R. G., Carrari-Santos, R., Sousa, K. R., Oliveira, T. R., Grativol, C., Olimpio, G., Venancio, T. M., Pinto, V. B., Quintanilha-Peixoto, G., Silveira, V., Santa-Catarna, C.

Date: 2025-10-15 · Version: 1

DOI: 10.1101/2025.10.13.682162

Model Organism: Paubrasilia echinata

seed maturation proteomics polyamine profiling stress tolerance LEA proteins

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

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