Keywords: paralog processing, CO2-fixing enzyme, transcriptome, yield, root development, phylogenomic discordance

Latest 12 Papers

Root-Suppressed Phenotype of Tomato Rs Mutant is Seemingly Related to Expression of Root-Meristem-Specific Sulfotransferases

Authors: Kumari, A., Gupta, P., Santisree, P., Pamei, I., Valluri,, S., Sharma, K., Venkateswara Rao, K., Shukla, S., Nama, S., Sreelakshmi, Y., Sharma, R.

Date: 2026-01-03 · Version: 1

DOI: 10.64898/2026.01.03.697460

Model Organism: Solanum lycopersicum

root development sulfur metabolism sulfotransferase radiation‑induced mutant tomato

An ancient alkalinization factor informs Arabidopsis root development

Authors: Xhelilaj, K., von Arx, M., Biermann, D., Parvanov, A., Faiss, N., Monte, I., Klingelhuber, F., Zipfel, C., Timmermans, M., Oecking, C., Gronnier, J.

Date: 2025-12-23 · Version: 1

DOI: 10.64898/2025.12.22.695669

Model Organism: Arabidopsis thaliana

REMORIN proteins H⁺‑ATPase inhibition extracellular pH (pHe) alkalinization root development Arabidopsis thaliana

Rubisco Dark Inhibition in Angiosperms Shows a Complex Distribution Pattern

Authors: Nehls-Ramos, C., Carmo-Silva, E., Orr, D. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.20.689527

Model Organism: Multi-species

Rubisco dark inhibition flowering plants phylogenetic analysis photosynthetic regulation CO2-fixing enzyme

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Evaluation of Morpho-physiological Traits of F1 Hybrids and Estimation of Standard Heterosis of Sweet Pepper (Capsicum annuum L.) in Sylhet

Authors: Kafi, A. A., Ferdousi, J., Hossain, M. I., Islam, M. S., Nath, D. D., Karim, M. A., Roy, S. K.

Date: 2025-09-21 · Version: 1

DOI: 10.1101/2025.09.18.677104

Model Organism: Capsicum annuum

Capsicum annuum hybrid evaluation heterosis morphological traits yield

Tomato leaf transcriptomic changes promoted by long-term water scarcity stress can be largely prevented by a fungal-based biostimulant

Authors: Lopez-Serrano, L., Ferez-Gomez, A., Romero-Aranda, R., Jaime Fernandez, E., Leal Lopez, J., Fernandez Baroja, E., Almagro, G., Dolezal, K., Novak, O., Diaz, L., Bautista, R., Leon Morcillo, R. J., Pozueta Romero, J.

Date: 2025-06-28 · Version: 1

DOI: 10.1101/2025.06.26.661737

Model Organism: Solanum lycopersicum

water deficit Trichoderma harzianum culture filtrate tomato drought tolerance transcriptome

Ethylene Receptor Gain- and Loss-of-function Mutants Reveal an ETR1-dependent Transcriptional Network in Roots

Authors: White, M. G., Harkey, A., Muhlemann, J. K., Olex, A. L., Pfeffer, N. J., Houben, M., Binder, B., Muday, G. K.

Date: 2025-06-22 · Version: 3

DOI: 10.1101/2024.06.26.600793

Model Organism: Arabidopsis thaliana

ethylene signaling ETR1 root development gene regulatory network Arabidopsis

Organellar data sets confirm overall angiosperm relationships if problematic RNA-edit sites are accounted for in mitochondrial genomes

Authors: Gerelle, W. K., Jost, M., Marques, I., Les, D., Vallejos, R., Little, S., Sinn, B. T., Sokoloff, D. D., Macfarlane, T. D., Iles, W., Feild, T., Mathews, S., Moore, M., Couvreur, T. L. P., Sauquet, H., Wanke, S., Graham, S. W.

Date: 2025-06-12 · Version: 1

DOI: 10.1101/2025.06.09.658674

Model Organism: Multi-species

organellar genomes angiosperm phylogeny mitochondrial RNA editing plastid phylogenomics phylogenomic discordance

Chemical Inhibition of Splicing-Related Protein Kinases Reveals Phosphorylation-Driven Regulation of RNA Alternative Splicing in Arabidopsis Seedlings

Authors: Rodriguez Gallo, M. C., Murray, C., Kennedy, C., Talasila, M., Bhatt, D., Steyer, J., Glover, M., Uhrig, R. G.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.24.644839

Model Organism: Arabidopsis thaliana

SR protein kinases alternative splicing root development chemical inhibition phosphoproteomics

MYB93 regulates responses to environmental sulphur in Arabidopsis and tomato.

Authors: Cao, X., Wilkinson, H. B., Hutton, B., McMulkin, N., Graham, N. S., Etherington, R., Oliver, A. G., Clayton, C. M., Kaur, H., Coates, J. C.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.04.641362

Model Organism: Arabidopsis thaliana

sulfur nutrition AtMYB93 root development transcriptome analysis elemental analysis

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