Keywords: paralog processing, DDM1, alternative splicing, local adaptation

Latest 22 Papers

Major alleles of CDCA7α shape CG-methylation in Arabidopsis thaliana

Authors: Bourguet, P., Lorkovic, Z. J., Casado, D. K., Bapteste, V., Cho, C. H., Igolkina, A., Lee, C.-R., Nordborg, M., Berger, F., Sasaki, E.

Date: 2025-09-07 · Version: 1

DOI: 10.1101/2025.09.03.673934

Model Organism: Arabidopsis thaliana

DNA methylation CG methylation (mCG)CDCA7 DDM1 local adaptation

DECREASE IN DNA METHYLATION 1-mediated epigenetic regulation maintains gene expression balance required for heterosis in Arabidopsis thaliana

Authors: Matsuo, K., Wu, R., Yonechi, H., Murakami, T., Takahashi, S., Kamio, A., Akter, M. A., Kamiya, Y., Nishimura, K., Matsuura, T., Tonosaki, K., Shimizu, M., Ikeda, Y., Kobayashi, H., Seki, M., Dennis, E. S., Fujimoto, R.

Date: 2025-08-26 · Version: 1

DOI: 10.1101/2025.08.21.671646

Model Organism: Arabidopsis thaliana

heterosis DNA methylation DDM1 Arabidopsis thaliana transcriptomics

Contrasting patterns of local adaptation and climate resilience across forest management regimes in Norway spruce (Picea abies): implications for reforestation practices under climate change

Authors: Eklöf, H., Bernhardsson, C., Ingvarsson, P. K.

Date: 2025-06-17 · Version: 1

DOI: 10.1101/2025.06.11.659044

Model Organism: Picea abies

genetic diversity local adaptation Picea abies forest management climate change

A network of RS splicing regulatory proteins controls light-dependent splicing and seedling development

Authors: Saile, J., Walter, H., Denecke, M., Lederer, P., Schuetz, L., Hiltbrunner, A., Lepp, K., Lobato-Gil, S., Beli, P., Wachter, A.

Date: 2025-04-08 · Version: 1

DOI: 10.1101/2025.04.07.646831

Model Organism: Arabidopsis thaliana

photomorphogenesis alternative splicing phospho-proteomics RS (SR) proteins Arabidopsis thaliana

Extensive photophysiological variation in wild barley is linked to environmental origin

Authors: Breil-Aubert, M., Shaw, K., Royles, J., Rodrigues Gabriel Sales, C., Walter, J., Taylor, G., Vath, R., Bdolach, E., Dev Tiwari, L., Mathan, J., Lawson, T., Fridman, E., Kromdijk, J., Ferguson, J. N.

Date: 2025-03-31 · Version: 1

DOI: 10.1101/2025.03.28.645825

Model Organism: Hordeum vulgare

crop wild relatives photophysiology genome-wide association study local adaptation stomatal conductance

Chemical Inhibition of Splicing-Related Protein Kinases Reveals Phosphorylation-Driven Regulation of RNA Alternative Splicing in Arabidopsis Seedlings

Authors: Rodriguez Gallo, M. C., Murray, C., Kennedy, C., Talasila, M., Bhatt, D., Steyer, J., Glover, M., Uhrig, R. G.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.24.644839

Model Organism: Arabidopsis thaliana

SR protein kinases alternative splicing root development chemical inhibition phosphoproteomics

Next-Generation Mapping of the ACINUS-Mediated Alternative Splicing Machinery and Its Regulation by O-glycosylation in Arabidopsis

Authors: Shrestha, R., Reyes, A. V., Carey, S., Karunadasa, S. S., Zhai, W., Byun, D., Lin, W.-D., Li, J., Alerte, K., Cui, H., Wang, Z.-Y., Xu, S.-L.

Date: 2025-03-26 · Version: 2

DOI: 10.1101/2025.01.04.631329

Model Organism: Arabidopsis thaliana

alternative splicing TurboID proximity labeling O-glycosylation Arabidopsis thaliana splicing factor ACINUS

Phytochrome A is required for light-inhibited germination of Aethionema arabicum seed

Authors: Merai, Z., Xu, F., Hajdu, A., Kozma-Bognar, L., Dolan, L.

Date: 2025-02-28 · Version: 1

DOI: 10.1101/2025.02.26.640300

Model Organism: Aethionema arabicum

negative photoblastic germination phytochrome A Aethionema arabicum high‑irradiance response local adaptation

Transcriptome differentiation in Cryptomeria japonica trees with different origins growing in the north and south of Japan

Authors: Ujino-Ihara, T., Uchiyama, K., Kanetani, S., Suyama, Y., Tsumura, Y.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.22.639673

Model Organism: Cryptomeria japonica

local adaptation transcriptome analysis weighted gene co‑expression network analysis (WGCNA)SNP differentiation defense response genes

Loss of RdDM-independent CHH methylation is sufficient for disruption of chromosome-specific rRNA gene silencing

Authors: McKinlay, A., Enganti, R., Puppala, N. V., Saradadevi, G. P., Blevins, T., Mohannath, G.

Date: 2025-02-20 · Version: 3

DOI: 10.1101/2023.02.03.526984

Model Organism: Arabidopsis thaliana

CHH methylation rRNA gene silencing Nucleolus organizer region (NOR)CMT2 DDM1

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