Keywords: paralog processing, DDM1, transcriptome reprogramming, autophagy

Latest 21 Papers

DECREASE IN DNA METHYLATION 1-mediated epigenetic regulation maintains gene expression balance required for heterosis in Arabidopsis thaliana

Authors: Matsuo, K., Wu, R., Yonechi, H., Murakami, T., Takahashi, S., Kamio, A., Akter, M. A., Kamiya, Y., Nishimura, K., Matsuura, T., Tonosaki, K., Shimizu, M., Ikeda, Y., Kobayashi, H., Seki, M., Dennis, E. S., Fujimoto, R.

Date: 2025-08-26 · Version: 1

DOI: 10.1101/2025.08.21.671646

Model Organism: Arabidopsis thaliana

heterosis DNA methylation DDM1 Arabidopsis thaliana transcriptomics

A dual component system instructs membrane hydrolysis during the final stages of plant autophagy

Authors: Castets, J., Buridan, M., Toboso Moreno, I., Sanchez de Medina Hernandez, V., Gomez, R. E., Dittrich-Domergue, F., Lupette, J., Chambaud, C., Pascal, S., Ibrahim, T., Bozkurt, T. O., Dagdas, Y., Domergue, F., Joubes, J., Minina, A. E. A., Bernard, A.

Date: 2025-08-02 · Version: 1

DOI: 10.1101/2025.08.01.668046

Model Organism: Arabidopsis thaliana

autophagy phospholipase Arabidopsis thaliana vacuolar lumen LCAT3/LCAT4

ATG8i Autophagy activation is mediated by cytosolic Ca2+ under osmotic stress in Arabidopsis thaliana

Authors: Castillo-Olamendi, L., Gutierrez-Martinez, J., Jimenez-Nopala, G., Galindo, A., Barrera-Ortiz, S., Rosas-Santiago, P., Cordoba, E., Leon, P., Porta, H.

Date: 2025-07-02 · Version: 1

DOI: 10.1101/2025.07.02.662772

Model Organism: General

autophagy osmotic stress Ca²⁺ signaling ATG8i ER‑phagy

SnRK1.1 Coordinates Organ-Specific Growth-Defense Programs via Transcriptomic Rewiring in Arabidopsis thaliana

Authors: Kalachova, T., Muller, K., Lacek, J., Pree, S., Antonova, A., Bondarenko, O., Burketova, L., Retzer, K., Weckwerth, W.

Date: 2025-04-29 · Version: 1

DOI: 10.1101/2025.04.25.650715

Model Organism: Arabidopsis thaliana

SnRK1 KIN10 transcriptome reprogramming plant immunity tissue-specific signaling

The autophagy-related genes AtATG5 and AtATG7 influence reserve mobilisation and responses to ABA during seed germination in Arabidopsis thaliana

Authors: Contreras, E., Sanchez-Vicente, I., Pastor-Mora, E., Aylon-Rodriguez, M., Gonzalez-Ceballos, M., Delgado-Gutierrez, M. A., Lorenzo, O., Vicente-Carbajosa, J., Iglesias-Fernandez, R.

Date: 2025-04-21 · Version: 2

DOI: 10.1101/2024.05.15.593177

Model Organism: Arabidopsis thaliana

autophagy Arabidopsis thaliana ABA signaling ATG5/ATG7 ABI5

Root hair lifespan is antagonistically controlled by autophagy and programmed cell death

Authors: Feng, Q., Zhu, S., Wang, X., Liu, Y., Zhao, J., Dagdas, Y., Nowack, M. K.

Date: 2025-03-19 · Version: 1

DOI: 10.1101/2025.03.18.643910

Model Organism: Arabidopsis thaliana

root hair longevity autophagy ATG2 ATG5 ATG7 NAC transcription factors programmed cell death

Cell-type specific autophagy in root hair forming cells is essential for salt stress tolerance in Arabidopsis thaliana

Authors: Zhao, J., Loefke, C., Yeung, K. C., Chen, Y., Dagdas, Y.

Date: 2025-03-18 · Version: 1

DOI: 10.1101/2025.03.18.643786

Model Organism: Arabidopsis thaliana

autophagy trichoblast Arabidopsis thaliana salt stress cell-type-specific regulation

Bacteria use processing body condensates to attenuate host translation during infection

Authors: Gonzalez-Fuente, M., Schulz, N., Abdrakhmanov, A., Izzati, G., Zhu, S., Langin, G., Gouguet, P., Franz-Wachtel, M., Macek, B., Hafren, A., Dagdas, Y., Üstün, S.

Date: 2025-03-11 · Version: 2

DOI: 10.1101/2025.01.09.632196

Model Organism: General

Pseudomonas syringae processing bodies translation attenuation ER stress response autophagy

Melatonin-mediated methylglyoxal homeostasis and regulation of autophagy during seed germination under PEG-induced drought stress in upland cotton

Authors: Dake, D., Laha, S., Kumar, A., Gudipalli, P.

Date: 2025-02-23 · Version: 1

DOI: 10.1101/2025.02.18.638685

Model Organism: Gossypium hirsutum

melatonin priming methylglyoxal detoxification drought stress autophagy glyoxalase system

Loss of RdDM-independent CHH methylation is sufficient for disruption of chromosome-specific rRNA gene silencing

Authors: McKinlay, A., Enganti, R., Puppala, N. V., Saradadevi, G. P., Blevins, T., Mohannath, G.

Date: 2025-02-20 · Version: 3

DOI: 10.1101/2023.02.03.526984

Model Organism: Arabidopsis thaliana

CHH methylation rRNA gene silencing Nucleolus organizer region (NOR)CMT2 DDM1

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