Keywords: paralog processing, FACE, SWI3, transcriptomic analysis, ascorbate, DNA methylation

Latest 28 Papers

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Multi-year study on the effects of elevated CO2 in mature oaks unravels subtle metabolic adjustments but stable biotic stress resistance

Authors: Sanchez-Lucas, R., Raw, M., Datta, A., Hawkins, K., Brettle, D., Platt, E. A., Ullah, S., Hart, K., Mayoral, C., Stegner, M., Kranner, I., Hayward, S. A., Pastor, V., MacKenzie, A. R., Luna, E.

Date: 2025-05-06 · Version: 1

DOI: 10.1101/2025.05.03.652050

Model Organism: Quercus robur

elevated CO2 Quercus robur metabolomic profiling biotic stress FACE

Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana

Authors: Zhong, Z., Bailey, M., Kim, Y.-I., Pesaran-Afsharyan, N., Parker, B., Arathoon, L., Li, X., Rundle, C. A., Behrens, A., Nedialkova, D. D., Slavov, G., Hassani-Pak, K., Lilley, K. S., Theodoulou, F. L., Mott, R.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2025.01.08.631880

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana codon usage gene expression DNA methylation ribosome profiling

Impaired methyl recycling induces substantial shifts in sulfur utilization in Arabidopsis

Authors: Tremblay, B. J.-M., Adeel, S. A., Saechao, M., Dong, Y., Andrianasolo, E., Steele, J. M., Traa, A., Yogadasan, N., Waduwara-Jayabahu, I., Katzenback, B. A., Hell, R., Wirtz, M., Moffatt, B. A.

Date: 2025-03-13 · Version: 1

DOI: 10.1101/2025.03.09.642221

Model Organism: General

sulfur metabolism methylthioadenosine nucleosidase methionine/S‑adenosylmethionine biosynthesis DNA methylation reproductive development

Arabidopsis REM transcription factors and GDE1 shape the DNA methylation landscape through the recruitment of RNA Polymerase IV transcription complexes.

Authors: Wu, Z., Xue, Y., Wang, S., Shih, Y.-H., Zhong, Z., Feng, S., Draper, J., Lu, A., Sha, J., Li, L., Wohlschlegel, J., Wu, K., Jacobsen, S. E.

Date: 2025-02-23 · Version: 1

DOI: 10.1101/2025.02.21.639493

Model Organism: Arabidopsis thaliana

DNA methylation 24‑nt siRNA REM transcription factors RNA polymerase IV Arabidopsis

Transcription factors instruct DNA methylation patterns in plant reproductive tissues

Authors: Xu, G., Chen, Y., Wang, F., Li, E., Law, J.

Date: 2025-02-23 · Version: 1

DOI: 10.1101/2025.02.21.639562

Model Organism: Arabidopsis thaliana

DNA methylation RNA‑directed DNA methylation (RdDM)REPRODUCTIVE MERISTEM transcription factors sex‑specific epigenetic regulation Arabidopsis thaliana

The dynamics of ACR and DNA methylation impact asymmetric subgenome dominance in allotriploid Brassica species

Authors: dai, c., Dou, S., quan, c.

Date: 2025-02-20 · Version: 1

DOI: 10.1101/2025.02.16.638486

Model Organism: Brassica napus

polyploidy subgenome dominance accessible chromatin regions DNA methylation Brassica allotriploids

Assembly and annotation of Solanum dulcamara and Solanum nigrum plant genomes, two nightshades with different susceptibilities to Ralstonia solanacearum

Authors: Franco Ortega, S., James, S. R., Gilbert, L., Hogg, K., Stevens, H., Daff, J., Friman, V. P., Harper, A. L.

Date: 2025-02-17 · Version: 1

DOI: 10.1101/2025.02.12.637948

Model Organism: Solanum dulcamara

Ralstonia solanacearum resistance Solanum dulcamara genome pattern recognition receptors auxin transport genes DNA methylation

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