Keywords: paralog processing, H2O2 homeostasis, alternative splicing, transcriptomics, reactive oxygen species

Latest 72 Papers

Omics-driven Identification of Candidate Genes and SNP markers in a Major QTL Controlling Early Heading in Rice

Authors: Rao, D., T, N. S., CG, G., Gaur, N., Jamaloddin, M., Maganti, S. M., Raman, M. S., Patel, H. K., Tiwari, S., Sonti, R. V.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.25.645207

Model Organism: Oryza sativa

heading date rice (Oryza sativa)QTL-seq SNP markers transcriptomics

Multilevel analysis of response to plant growth promoting and pathogenic bacteria in Arabidopsis roots and the role of CYP71A27 in this response

Authors: Koprivova, A., Ristova, D., Berka, M., Berkova, V., Türksoy, G. M., Andersen, T. G., Westhoff, P., Cerny, M., Kopriva, S.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.26.645393

Model Organism: Arabidopsis thaliana

CYP71A27 plant‑microbe interaction Pseudomonas fluorescens CH267 Burkholderia glumeae PG1 transcriptomics

Chemical Inhibition of Splicing-Related Protein Kinases Reveals Phosphorylation-Driven Regulation of RNA Alternative Splicing in Arabidopsis Seedlings

Authors: Rodriguez Gallo, M. C., Murray, C., Kennedy, C., Talasila, M., Bhatt, D., Steyer, J., Glover, M., Uhrig, R. G.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.24.644839

Model Organism: Arabidopsis thaliana

SR protein kinases alternative splicing root development chemical inhibition phosphoproteomics

Next-Generation Mapping of the ACINUS-Mediated Alternative Splicing Machinery and Its Regulation by O-glycosylation in Arabidopsis

Authors: Shrestha, R., Reyes, A. V., Carey, S., Karunadasa, S. S., Zhai, W., Byun, D., Lin, W.-D., Li, J., Alerte, K., Cui, H., Wang, Z.-Y., Xu, S.-L.

Date: 2025-03-26 · Version: 2

DOI: 10.1101/2025.01.04.631329

Model Organism: Arabidopsis thaliana

alternative splicing TurboID proximity labeling O-glycosylation Arabidopsis thaliana splicing factor ACINUS

Antioxidant properties of dihydroxy B-ring flavonoids modulate circadian amplitude in Arabidopsis

Authors: Littleton, E. S., Hildreth, S. B., Kojima, S., Winkel, B. S. J.

Date: 2025-03-13 · Version: 1

DOI: 10.1101/2025.03.09.641856

Model Organism: Arabidopsis thaliana

flavonoids circadian clock reactive oxygen species TOC1:LUC reporter chloroplast calcium signaling

The hollow truth: ethylene-triggered ROS, PCD, senescence, and autophagy drive hollow stem formation

Authors: Yan, M., Fan, W., Yang, W., Zhao, J., Meng, Y., Zhou, W., Zhuang, H., Xu, Z., Wang, Y., Huang, Q., Yuan, L., Wang, H., Yang, J.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.06.641815

Model Organism: Ipomoea aquatica

hollow stem programmed cell death ethylene signaling reactive oxygen species NAC transcription factors

The genome of the vining fern Lygodium microphyllum highlights genomic and functional differences between life phases of an invasive plant

Authors: Pelosi, J., Davenport, R., Kuo, L.-Y., Gray, L. N., Dant, A. J., Kim, E. H., Li, F.-W., Dlugosch, K. M., Krabbenhoft, T. J., Barbazuk, W. B., Sessa, E. B.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.06.640867

Model Organism: Lygodium microphyllum

Lygodium microphyllum alternation of generations transcriptomics methylome invasive species

Protein and genetic interactions between RACK1A and FSD1 modulate plant development and stress granule-dependent response to salt in Arabidopsis.

Authors: Melicher, P., Dvorak, P., Tsinyk, M., Rehak, J., Samajova, O., Hlavackova, K., Ovecka, M., Samaj, J., Takac, T.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.25.640159

Model Organism: Arabidopsis thaliana

reactive oxygen species salt stress RACK1A-FSD1 interaction stress granules Arabidopsis

Pattern-triggered immunity in blue and white seed cultivars of Papaver somniferum

Authors: Hernandez Orozco, J. S., Iakovenko, O., Zeiner, A., Hronkova, M., Kubasek, J., Kucerova, B., Vachova, I., Pop, S., Marsik, P., Macho, M., Fojtikova, P., Rychla, A., Hejna, O., Kulich, I., Wrzaczek, M., Janda, M.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.23.639761

Model Organism: Papaver somniferum

Pattern‑triggered immunity flg22 reactive oxygen species MAPK phosphorylation Papaver somniferum

Transcriptomic insights into the role of miR394 in the regulation of flowering time in Arabidopsis thaliana

Authors: Belen, F., Bernardi, Y., Reutemann, A., Vegetti, A., Dotto, M. C.

Date: 2025-02-20 · Version: 1

DOI: 10.1101/2025.02.15.638417

Model Organism: Arabidopsis thaliana

miR394 flowering time Arabidopsis thaliana transcriptomics lncRNA

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