Keywords: paralog processing, Marchantia polymorpha, comparative transcriptomics, tomato

Latest 50 Papers

Thermotolerant pollen tube growth is controlled by RALF signaling.

Authors: Althiab Almasaud, R., Ouonkap Yimga, S. V., Ingram, J., Oseguera, Y., Alkassem Alosman, M., Travis, C., Henry, A., Medina, M., Oulhen, N., Wessel, G. M., Delong, A., Pease, J., DaSilva, N., Johnson, M.

Date: 2025-11-12 · Version: 2

DOI: 10.1101/2025.10.25.684177

Model Organism: Solanum lycopersicum

thermotolerant pollen tube growth heat stress RALF signaling pollen tube integrity tomato

Antirrhinum flower shape: unravelling gene expression across developmental axes and boundaries

Authors: Cunha, A. M., Raimundo, J., Verweij, A., Bradley, D., Coen, E., Costa, M. M. R.

Date: 2025-11-11 · Version: 1

DOI: 10.1101/2025.11.10.687484

Model Organism: Antirrhinum majus

Antirrhinum majus dorsoventral axis patterning comparative transcriptomics AmCYC/AmDIV transcription factors NGATHA‑LIKE1‑miR164 regulatory module

Antagonism between blue and red light-signalling controls thallus flatness in Marchantia polymorpha

Authors: Roetzer, J., Asper, B., Meir, Z., Edelbacher, N., Merai, Z., Datta, S., Dolan, L.

Date: 2025-11-11 · Version: 1

DOI: 10.1101/2025.11.10.687525

Model Organism: Marchantia polymorpha

light signaling thallus tropism Marchantia polymorpha photoreceptor mutants BBX transcription factors

Nanoclustering of a plant transcription factor enables strong yet specific DNA binding

Authors: Arfman, K., Janssen, B. P. J., Romein, R., van den Boom, S., van der Woude, M., Jansen, L., Rademaker, M., Hernandez-Garcia, J., Ramalho, J. J., Dipp-Alvarez, M., Borst, J. W., Weijers, D., van Mierlo, C. P. M., Sprakel, J.

Date: 2025-11-06 · Version: 1

DOI: 10.1101/2025.11.05.686732

Model Organism: Marchantia polymorpha

Transcription factor nanoclusters Auxin Response Factors Liquid phase separation Marchantia polymorpha DNA‑binding specificity

Conservation and divergence of UVR8-COP1/SPA-HY5 signaling in UV-B responses of Marchantia polymorpha

Authors: Liang, Y., Podolec, R., Chappuis, R., Defossez, E., Glauser, G., Rötzer, J., Stolze, S. C., Dolan, L., Nakagami, H., Demarsy, E., Ulm, R.

Date: 2025-11-04 · Version: 2

DOI: 10.1101/2025.07.16.665153

Model Organism: Marchantia polymorpha

UV‑B signaling Marchantia polymorpha MpUVR8 COP1 RUP

Symbiotic diversification relies on an ancestral gene network in plants

Authors: Castanedo, L., Melkonian, K., Vernie, T., Chauderon, L., Pellen, T., Bianconi, M., Lefort, C., Libourel, C., Le Ru, A., Aziz, S., Latorre, C., Thiercelin, O., Rodde, N., Cauet, S., Callot, C., Forrest, L., Nishiyama, T., Wickell, D., Li, F.-W., Keller, J., Delaux, P.-M.

Date: 2025-11-03 · Version: 2

DOI: 10.1101/2025.04.01.646537

Model Organism: Marchantia paleacea

ericoid mycorrhizae intracellular symbiosis ancestral gene module liverwort comparative transcriptomics

SWI3 regulates male sex determination in Marchantia polymorpha

Authors: Quiles, M. L., Raval, P. K., Rensing, S. A., Gould, S. B.

Date: 2025-10-30 · Version: 1

DOI: 10.1101/2025.10.29.685095

Model Organism: Marchantia polymorpha

SWI3 chromatin regulation Marchantia polymorpha gametangiophore development transcriptomics

ABCG transporters are involved in the accumulation of specialized metabolites in the oil bodies of Marchantia polymorpha

Authors: Kanazawa, T., Kawaguchi, T., Moriwaki, Y., Iwasaki, K.-i., Ueda, T., Matsui, K.

Date: 2025-10-29 · Version: 1

DOI: 10.1101/2025.10.27.684951

Model Organism: Marchantia polymorpha

ABC transporters oil bodies specialized metabolites Marchantia polymorpha loss‑of‑function mutants

Discovery of tomato UDP-glucosyltransferases involved in bioactive jasmonate homeostasis using limited proteolysis-coupled mass spectrometry

Authors: Venegas-Molina, J., Mohnike, L., Selma Garcia, S., Janssens, H., Colembie, R., Kimpe, I., Jaramillo-Madrid, A. C., Lacchini, E., Winne, J. M., Van Damme, P., Feussner, I., Goossens, A., Sola, K.

Date: 2025-10-15 · Version: 1

DOI: 10.1101/2025.10.15.682356

Model Organism: Solanum lycopersicum

jasmonic acid limited proteolysis‑coupled mass spectrometry UDP‑glucuronosyltransferase JA catabolism tomato

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

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