Keywords: paralog processing, SWI3, root development, GWAS, transcriptome analysis, gene regulatory network

Latest 40 Papers

Whole genome sequencing-based multi-locus association mapping for kernel iron, zinc and protein content in groundnut

Authors: Sagar, U. N., Parmar, S., Gangurde, S. S., Sharma, V., Pandey, A. K., Mohinuddin, D. K., Dube, N., Bhat, R. S., John, K., Sreevalli, M. D., Rani, P. S., Singh, K., Varshney, R. K., Pandey, M. K.

Date: 2025-08-05 · Version: 1

DOI: 10.1101/2025.08.04.668427

Model Organism: Arachis hypogaea

groundnut nutritional quality GWAS SNP markers KASP

HHO5: A key orchestrator of dose-dependent nitrogen signaling pathways in Arabidopsis

Authors: Hinckley, W. E., Swift, J., Romei, F., Muschietti, J., Huang, S. S. C., Coruzzi, G. M., Obertello, M.

Date: 2025-08-02 · Version: 1

DOI: 10.1101/2025.07.31.667803

Model Organism: General

HHO5 transcription factor nitrogen-dose signaling phloem-specific expression dual activator/repressor gene regulatory network

Integrative genomic and transcriptomic analyses uncover regulatory landscape of symbiotic nitrogen fixation in soybean natural population

Authors: Li, Y., Feng, w., Feng, X., Liu, X., Hao, S., Lian, L., Gao, L., Shao, Y., Chen, H., Chen, Z., Yuan, J., Qin, L., Li, X., Li, X., Wang, X.

Date: 2025-07-23 · Version: 1

DOI: 10.1101/2025.07.18.665310

Model Organism: Glycine max

symbiotic nitrogen fixation GWAS TWAS eQTL mapping ATAC-seq

Exploring phenotypic and genetic variation in Lactuca with GWAS in L. sativa and L. serriola

Authors: Mehrem, S. L., Van den Ackerveken, G., Snoek, B. L.

Date: 2025-07-01 · Version: 1

DOI: 10.1101/2025.06.27.661939

Model Organism: Multi-species

Lactuca wild relatives anthocyanin accumulation leaf morphology pathogen resistance GWAS

Spatial Coordination between Leaf Gradient and Temperature Response in Barley

Authors: Fernandez, E. C., Tu, G., Dai, W., Yang, S., Liu, Z., Grzybowski, M., Liang, Z.

Date: 2025-06-27 · Version: 1

DOI: 10.1101/2025.06.24.661333

Model Organism: Hordeum vulgare

Barley (Hordeum vulgare)heat stress chlorophyll fluorescence imaging NPQ kinetics GWAS

Gene regulatory network analysis of somatic embryogenesis identifies morphogenic genes that increase maize transformation frequency

Authors: Renema, J., Luckicheva, S., Verwaerde, I., Aesaert, S., Coussens, G., De Block, J., Grones, C., Eekhout, T., De Rybel, B., Brew-Appiah, R. A. T., Bagley, C. A., Hoengenaert, L., Vandepoele, K., Pauwels, L.

Date: 2025-06-23 · Version: 1

DOI: 10.1101/2025.06.22.659756

Model Organism: Zea mays

somatic embryogenesis transcription factors Zea mays single-cell transcriptomics gene regulatory network

Ethylene Receptor Gain- and Loss-of-function Mutants Reveal an ETR1-dependent Transcriptional Network in Roots

Authors: White, M. G., Harkey, A., Muhlemann, J. K., Olex, A. L., Pfeffer, N. J., Houben, M., Binder, B., Muday, G. K.

Date: 2025-06-22 · Version: 3

DOI: 10.1101/2024.06.26.600793

Model Organism: Arabidopsis thaliana

ethylene signaling ETR1 root development gene regulatory network Arabidopsis

Single-Nucleus Transcriptomics Reveals How Tissue Context Shapes the Circadian Transcriptome of the Arabidopsis Leaf

Authors: Zulfiqar, A., Myers, Z. A., Menon, A., Greenham, K.

Date: 2025-06-16 · Version: 1

DOI: 10.1101/2025.06.12.659411

Model Organism: Arabidopsis thaliana

circadian regulation single-nucleus RNA-seq cell-type-specific expression Arabidopsis thaliana leaf gene regulatory network

Stage-resolved gene regulatory network analysis reveals developmental reprogramming and genes with robust stem-preferred expression in sorghum

Authors: Fu, J., James, B., Hetti-Arachchilage, M., Lei, Y., McKinley, B., Kurtz, E., Barry, K., Moose, S. P., Mullet, J. E., Swaminathan, K., Marshall-Colon, A.

Date: 2025-05-30 · Version: 1

DOI: 10.1101/2025.05.27.656329

Model Organism: Sorghum bicolor

Sorghum bicolor stem organ-specific expression stem-specific transcription factors gene regulatory network bioenergy feedstock

Physiological characterization in a somaclonal mutant for fruit shape derived from persimmon 'Hiratanenashi'

Authors: Horiuchi, A., Matsuzaki, R., Onoue, N., Ushijima, K., Kubo, Y., Akagi, T., Minamikawa, M. F.

Date: 2025-05-19 · Version: 1

DOI: 10.1101/2025.05.19.654774

Model Organism: Diospyros kaki

fruit shape persimmon (Diospyros kaki)elliptic Fourier descriptor transcriptome analysis WOX13

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