Keywords: paralog processing, ascorbate, CO2 enrichment, comparative transcriptomics, lipidomics

Latest 17 Papers

Network analysis of flowering time genes suggests regulatory changes among SOC1 orthologues in response to cold in Brassica napus

Authors: Sidhu, G. S., Burrows, S., Woolfenden, H., Wells, R., Morris, R. J.

Date: 2026-01-20 · Version: 2

DOI: 10.64898/2025.12.16.694548

Model Organism: Brassica napus

flowering time gene regulatory network comparative transcriptomics Brassica napus subfunctionalisation

Antirrhinum flower shape: unravelling gene expression across developmental axes and boundaries

Authors: Cunha, A. M., Raimundo, J., Verweij, A., Bradley, D., Coen, E., Costa, M. M. R.

Date: 2025-11-11 · Version: 1

DOI: 10.1101/2025.11.10.687484

Model Organism: Antirrhinum majus

Antirrhinum majus dorsoventral axis patterning comparative transcriptomics AmCYC/AmDIV transcription factors NGATHA‑LIKE1‑miR164 regulatory module

Symbiotic diversification relies on an ancestral gene network in plants

Authors: Castanedo, L., Melkonian, K., Vernie, T., Chauderon, L., Pellen, T., Bianconi, M., Lefort, C., Libourel, C., Le Ru, A., Aziz, S., Latorre, C., Thiercelin, O., Rodde, N., Cauet, S., Callot, C., Forrest, L., Nishiyama, T., Wickell, D., Li, F.-W., Keller, J., Delaux, P.-M.

Date: 2025-11-03 · Version: 2

DOI: 10.1101/2025.04.01.646537

Model Organism: Marchantia paleacea

ericoid mycorrhizae intracellular symbiosis ancestral gene module liverwort comparative transcriptomics

Leveraging Crop Wild Relatives and Ploidy Level for Climate-Resilient Annual Ryegrass

Authors: Mailhos, M. E., Timmers, J., Erickson, J., Caram, N., Messina, C. D., Rios, E. F.

Date: 2025-10-18 · Version: 1

DOI: 10.1101/2025.10.15.682691

Model Organism: Lolium multiflorum

polyploidy climate change Lolium multiflorum CO2 enrichment evapotranspiration

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Unveiling the molecular identity of plant autophagic compartments: A proteo-lipidomic study in Arabidopsis thaliana

Authors: Lupette, J., Chambaud, C., Buridan, M., Castets, J., Wattelet-Boyer, V., Toboso Moreno, I., Kosuth, T., Yatim, C., Dittrich-Domergue, F., Gros, V., Jouhet, J., Claverol, S., Herice, C., Melser, S., Genva, M., Fouillen, L., Bessoule, J.-J., Domergue, F., Bernard, A.

Date: 2025-08-28 · Version: 1

DOI: 10.1101/2025.08.25.671700

Model Organism: Arabidopsis thaliana

autophagy phagophore membrane proteomics lipidomics membrane remodeling

Thermotolerance in Chia (Salvia hispanica L.) is Mediated by Rapid Heat-Induced Transcriptomic Reprogramming and Lipid Remodelling in Leaves

Authors: Zare, T., Kehelpannala, C., Bhatnagar, A., Rupasinghe, T., Ebert, B., Fournier-Level, A., Roessner, U.

Date: 2025-06-02 · Version: 1

DOI: 10.1101/2025.05.30.656991

Model Organism: Salvia hispanica

heat stress Salvia hispanica transcriptomics lipidomics calcium signaling

Dynamic changes to the plastoglobule lipidome and proteome in water-deficient maize

Authors: Devadasu, E., Schilmiller, A. L., Gonzalez, N., Lundquist, P. K.

Date: 2025-05-30 · Version: 1

DOI: 10.1101/2025.05.26.656201

Model Organism: Zea mays

drought resilience plastoglobules lipidomics quantitative proteomics Zea mays

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

2-Oxoglutarate-dependent dioxygenases contribute to cardenolide biosynthesis in Erysimum cheiranthoides (wormseed wallflower)

Authors: Younkin, G., Holland, C. K., Jander, G.

Date: 2025-04-16 · Version: 1

DOI: 10.1101/2025.04.10.648230

Model Organism: Erysimum cheiranthoides

cardenolide biosynthesis 2‑oxoglutarate‑dependent dioxygenases hydroxylation comparative transcriptomics enzyme modeling

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