Keywords: paralog processing, ascorbate, codon usage, phylogenetic analysis, CO2-fixing enzyme, Lhcx1

Latest 24 Papers

Lhcf2 in the peripheral antenna is essential for non-photochemical quenching and Lhcx1 accumulation in the diatom Chaetoceros gracilis

Authors: Xing, J., Kumazawa, M., Ifuku, K.

Date: 2026-01-20 · Version: 1

DOI: 10.64898/2026.01.17.700047

Model Organism: Chaetoceros gracilis

nonphotochemical quenching qE Lhcf2 Lhcx1 Chaetoceros gracilis

Membrane-binding domains define REMORIN phylogeny and provide a predicted structural basis for distinctive membrane nano-environments

Authors: Biermann, D., Gronnier, J.

Date: 2025-12-23 · Version: 1

DOI: 10.64898/2025.12.22.695504

Model Organism: General

REMORIN proteins C-terminal domain membrane nano-organization phylogenetic analysis structural bioinformatics

CHLOROPLAST GENOME AND PHYLOGENETIC ANALYSIS OF KATMON (Dillenia philippinensis Rolfe), A PHILIPPINE ENDEMIC FRUIT

Authors: Lucero, J. J. M., Munoz, J. A. M., Aglibot, L. Y., Cardona, D. E. M., Gueco, L. S., Manalang, A. P., Villanueva, J. C., Alonday, R. C. S.

Date: 2025-11-27 · Version: 1

DOI: 10.1101/2025.11.26.690882

Model Organism: Dillenia philippinensis

Dillenia philippinensis chloroplast genome Illumina NovaSeqX phylogenetic analysis simple sequence repeats

Rubisco Dark Inhibition in Angiosperms Shows a Complex Distribution Pattern

Authors: Nehls-Ramos, C., Carmo-Silva, E., Orr, D. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.20.689527

Model Organism: Multi-species

Rubisco dark inhibition flowering plants phylogenetic analysis photosynthetic regulation CO2-fixing enzyme

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Six New Species and Two Reinstatements of Viola (Violaceae) from China

Authors: Huang, Y., Fan, Q.

Date: 2025-10-03 · Version: 1

DOI: 10.1101/2025.10.02.679011

Model Organism: Viola

Viola new species phylogenetic analysis ITS GPI

Genome-wide Identification, Structural Features and Single-Cell Expression Atlas of the Carbonic Anhydrase Gene Family in Maize (Zea mays L.)

Authors: Gao, Y., Zhao, C.

Date: 2025-09-21 · Version: 1

DOI: 10.1101/2025.09.21.677582

Model Organism: Zea mays

carbonic anhydrases maize single-cell RNA‑seq phylogenetic analysis stress resilience

A plant-centric investigation of Class B Flavin-dependent Monooxygenase evolution and structural diversity

Authors: Christensen, J. M., Neilson, E. H.

Date: 2025-09-16 · Version: 1

DOI: 10.1101/2025.09.16.676513

Model Organism: Multi-species

Class B flavin-dependent monooxygenases phylogenetic analysis Viridiplantae domain architecture motif analysis

Evolutionary origin and functional mechanism of Lhcx in the diatom photoprotection

Authors: Kumazawa, M., Akimoto, S., Takabayashi, A., Imaizumi, K., Tsuji, S., Hasegawa, H., Sakurai, A., Imamura, S., Ishikawa, N., Inoue-Kashino, N., Kashino, Y., Ifuku, K.

Date: 2025-09-07 · Version: 1

DOI: 10.1101/2025.09.06.674587

Model Organism: Chaetoceros gracilis

Lhcx1 non‑photochemical quenching diatom photoprotection phylogenetic analysis Chaetoceros gracilis

Ubiquitin-like SUMO protease expansion in rice (Oryza sativa)

Authors: Sue-ob, K., Zhang, C., Sharma, E., Bhosale, R., Sadanandom, A., Jones, A. R.

Date: 2025-08-25 · Version: 1

DOI: 10.1101/2025.08.20.671006

Model Organism: Oryza sativa

SUMOylation ULP proteases Oryza sativa phylogenetic analysis stress response

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