Keywords: paralog processing, ascorbate, codon usage, root system architecture

Latest 13 Papers

Four Decades of Breeding and Increasing Plant Density Management Reshaped Maize Root System Architecture

Authors: Thies, A., Sciarresi, C., Trifunovic, S., Eudy, D., Vyn, T. J., Archontoulis, S., Topp, C. N.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.10.693575

Model Organism: Zea mays

root system architecture maize breeding planting density X‑ray tomography soil volume overlap

Systemic and local regulation of root growth by vascular trehalose 6-phosphate is correlated with re-allocation of primary metabolites between shoots and roots

Authors: Goebel, M., Foster, J., Westhoff, P., Skorzinski, N., Lepper, H., Njo, M. F., Schmid, M., Beeckman, T., Tanurdzic, M., Amtmann, A., Fichtner, F.

Date: 2025-11-13 · Version: 1

DOI: 10.1101/2025.11.13.688188

Model Organism: Arabidopsis thaliana

Trehalose-6-phosphate signaling vascular-derived metabolites root system architecture carbon‑nitrogen balance reciprocal grafting

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Exodermis lignification impacts lateral root emergence in Brachypodium distachyon

Authors: Bellande, K., Vieira Teixeira, C. D. J., D'orlando, A., Perez, L., Sibout, R., Roulin, A. C., Vermeer, J. E. M., Badet, T.

Date: 2025-09-04 · Version: 1

DOI: 10.1101/2025.09.02.673693

Model Organism: Brachypodium distachyon

lateral root emergence exodermis lignification root system architecture stress response

Growth Cost and Transport Efficiency Tradeoffs Define Root System Optimization Across Varying Developmental Stages and Environments in Arabidopsis

Authors: Faizi, K., Mehta, P., Maida, A., Humphreys, T., Berrigan, E., McKee-Reid, L., McCorkell, R., Tagade, A., Rumbelow, J., Showalter, J., Brent, L., Coroenne, C., Rigaud, A., Chandrasekhar, A., Navlakha, S., Martin, A., Pradal, C., Lee, S., Busch, W., Platre, M. P.

Date: 2025-07-26 · Version: 1

DOI: 10.1101/2025.07.25.666579

Model Organism: Arabidopsis thaliana

root system architecture Pareto optimality cost‑efficiency tradeoff manganese regulation hy5/chl1-5 genotype

Vertical rooting caused by enhanced functional allele of qSOR1 improves rice yield under drought stress

Authors: Kawai, T., Kitomi, Y., Kuroda, R., Nakata, R., Iba, M., Soma, F., Teramoto, S., Yamazaki, T., Sugimoto, K., Uga, Y.

Date: 2025-06-08 · Version: 1

DOI: 10.1101/2025.06.07.658467

Model Organism: Oryza sativa

drought resistance root system architecture qSOR1‑v allele gravitropism marker‑assisted selection

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

A 3D Modeling Framework for Quantifying Variation in Soybean Root Structure Architecture

Authors: Carpenter, J., Bogati, S., Wang, D., Jung, J.

Date: 2025-05-11 · Version: 1

DOI: 10.1101/2025.05.06.652473

Model Organism: Glycine max (soybean)

root system architecture photogrammetry 3D point cloud metabolic scaling soil environment plasticity

Divergence of root system traits in soybean between breeding and diversity lines

Authors: Bogati, S., Carpenter, J., Jung, J., Schafer, S. E., Danao, J., Woods, E., Song, Q., kantar, M., Ma, J., Wang, D. R.

Date: 2025-05-06 · Version: 1

DOI: 10.1101/2025.05.05.651701

Model Organism: Glycine max

root system architecture soybean breeding lines vs. landraces phenotypic plasticity 3D photogrammetry

Ethylene and ROS Signaling Are Key Regulators of Lateral Root Development under Salt Stress in Tomato

Authors: Rahmati Ishka, M., Zhao, J., Sussman, H., Mohanty, D., Craft, E., Yu, L., Pineros, M., Tester, M., Kawa, D., Mittler, R., Nelson, A., Fei, Z., Julkowska, M. M.

Date: 2025-04-15 · Version: 2

DOI: 10.1101/2024.06.20.599848

Model Organism: Solanum lycopersicum

root system architecture salt stress GWAS bulk segregant analysis RNA-Seq

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