Keywords: paralog processing, ascorbate, comparative transcriptomics, flavonoids

Latest 18 Papers

Network analysis of flowering time genes suggests regulatory changes among SOC1 orthologues in response to cold in Brassica napus

Authors: Sidhu, G. S., Burrows, S., Woolfenden, H., Wells, R., Morris, R. J.

Date: 2026-01-20 · Version: 2

DOI: 10.64898/2025.12.16.694548

flowering time gene regulatory network comparative transcriptomics Brassica napus subfunctionalisation

When flowers turn red: Pathogen induced flavonoid and anthocyanin biosynthesis in Chrysanthemum seticuspe confers resistanceto Botrytis cinerea

Authors: Hassan Muralidhar, S., Roijen, L.-M., Pieterse, F. P. J., SharathKumar, M., Saurabh Singh, K., van der Hooft, J. J. J., Fleissner, A., van Kan, J. A. L.

Date: 2025-12-23 · Version: 1

DOI: 10.64898/2025.12.20.695701

Model Organism: Chrysanthemum seticuspe

Botrytis cinerea Chrysanthemum seticuspe flavonoids anthocyanins transcriptomics and metabolomics

Identification of molecular mechanisms contributing to acquired thermotolerance by transcriptome profiling

Authors: Gao, G., Woo, Y., Gehring, C., Tester, M., Julkowska, M. M.

Date: 2025-12-03 · Version: 1

DOI: 10.64898/2025.12.01.691713

Model Organism: Arabidopsis thaliana

heat acclimation transcriptional memory flavonoids stomatal response Arabidopsis thaliana

Antirrhinum flower shape: unravelling gene expression across developmental axes and boundaries

Authors: Cunha, A. M., Raimundo, J., Verweij, A., Bradley, D., Coen, E., Costa, M. M. R.

Date: 2025-11-11 · Version: 1

DOI: 10.1101/2025.11.10.687484

Model Organism: Antirrhinum majus

Antirrhinum majus dorsoventral axis patterning comparative transcriptomics AmCYC/AmDIV transcription factors NGATHA‑LIKE1‑miR164 regulatory module

Symbiotic diversification relies on an ancestral gene network in plants

Authors: Castanedo, L., Melkonian, K., Vernie, T., Chauderon, L., Pellen, T., Bianconi, M., Lefort, C., Libourel, C., Le Ru, A., Aziz, S., Latorre, C., Thiercelin, O., Rodde, N., Cauet, S., Callot, C., Forrest, L., Nishiyama, T., Wickell, D., Li, F.-W., Keller, J., Delaux, P.-M.

Date: 2025-11-03 · Version: 2

DOI: 10.1101/2025.04.01.646537

Model Organism: Marchantia paleacea

ericoid mycorrhizae intracellular symbiosis ancestral gene module liverwort comparative transcriptomics

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Metabolite Profiling of Epimedium sagittatum Bee Pollen: Identified Bioactive Flavonoids with Multi-Disease Functional Food Potential

Authors: Niu, D. F., Chen, H.-x., Lu, C.-y., Zhang, C.-p., Zheng, Q.-l., Su, X.-l., Fan, X.-m., Luo, Y.-b., Li, S.-y., Yuan, B., Liu, P., Hu, F.-l.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.29.679240

Model Organism: Epimedium sagittatum

Epimedium sagittatum bee pollen metabolomics flavonoids UPLC‑MS/MS network pharmacology

A Multi-lensed Comparative Analysis of Select Secondary Metabolites Produced by Kale, Brassica oleracea, in Simulated Microgravity Versus Gravity Conditions

Authors: Osano, A., Dill, R., Li, Y., Yan, J., Ray, S., Ude, G., Iro, A.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.29.679299

Model Organism: Kale (Brassica oleracea var. acephala)

microgravity flavonoids metabolomics 1H NMR HPTLC

Spinach (Spinacia oleracea L.) Flavonoids Are Hydrolyzed During Digestion and Their Bioaccessibility Is Under Stronger Genetic Control than Raw Material Content

Authors: Dzakovich, M., Tak, A. L., Le, E. A., Dang, R. P., Redan, B. W., Dubrow, G. A.

Date: 2025-09-29 · Version: 1

DOI: 10.1101/2025.09.27.678982

Model Organism: Spinacia oleracea

flavonoids Spinacia oleracea bioaccessibility heritability diversity panel

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

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