Keywords: paralog processing, ascorbate, comparative transcriptomics, soybean

Latest 17 Papers

Network analysis of flowering time genes suggests regulatory changes among SOC1 orthologues in response to cold in Brassica napus

Authors: Sidhu, G. S., Burrows, S., Woolfenden, H., Wells, R., Morris, R. J.

Date: 2026-01-20 · Version: 2

DOI: 10.64898/2025.12.16.694548

Model Organism: Brassica napus

flowering time gene regulatory network comparative transcriptomics Brassica napus subfunctionalisation

Antirrhinum flower shape: unravelling gene expression across developmental axes and boundaries

Authors: Cunha, A. M., Raimundo, J., Verweij, A., Bradley, D., Coen, E., Costa, M. M. R.

Date: 2025-11-11 · Version: 1

DOI: 10.1101/2025.11.10.687484

Model Organism: Antirrhinum majus

Antirrhinum majus dorsoventral axis patterning comparative transcriptomics AmCYC/AmDIV transcription factors NGATHA‑LIKE1‑miR164 regulatory module

Symbiotic diversification relies on an ancestral gene network in plants

Authors: Castanedo, L., Melkonian, K., Vernie, T., Chauderon, L., Pellen, T., Bianconi, M., Lefort, C., Libourel, C., Le Ru, A., Aziz, S., Latorre, C., Thiercelin, O., Rodde, N., Cauet, S., Callot, C., Forrest, L., Nishiyama, T., Wickell, D., Li, F.-W., Keller, J., Delaux, P.-M.

Date: 2025-11-03 · Version: 2

DOI: 10.1101/2025.04.01.646537

Model Organism: Marchantia paleacea

ericoid mycorrhizae intracellular symbiosis ancestral gene module liverwort comparative transcriptomics

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

A comparative study of plant phenotyping workflows based on three-dimensional reconstruction from multi-view images

Authors: Someno, D., Noshita, K.

Date: 2025-09-20 · Version: 2

DOI: 10.1101/2024.03.21.586185

Model Organism: Glycine max

3D phenotyping deep neural network mask generation Structure from Motion leaf area estimation soybean

Divergence of Bowman-Birk Protease Inhibitor Family into seed-specific and environmentally responsive subfamilies in Legume and Soybean: Implication for Legume Seed Composition Improvement.

Authors: Wang, Z., Jiang, H., Liu, K., Lohani, N., Misra, S., Gomez-Luciano, L., Pokhrel, S., Collier, R., Kaeppler, S. M., An, Y.-q. C.

Date: 2025-08-27 · Version: 1

DOI: 10.1101/2025.08.26.658694

Model Organism: Glycine max

Bowman-Birk inhibitors soybean gene duplication CRISPR/Cas9 knockout antinutrient reduction

Heat Stress and Soil Microbial Disturbance Influence Soybean Root Metabolite, Microbiome Profiles, and Nodulation

Authors: Elango, D., Van der Laan, L., Gholizadeh, S., Premarathne, M. D. G. P., Dutter, C. R., DePew, C., McDaniel, M., Singh, A. K.

Date: 2025-07-14 · Version: 1

DOI: 10.1101/2025.07.13.664636

Model Organism: Glycine max

heat stress rhizosphere microbiome soybean root metabolomics nitrogen fixation

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Transcriptomic and physiological responses of soybean plants subjected to a combination of water deficit and heat stress under field conditions

Authors: Sinha, R., Pelaez-Vico, M. A., Dhakal, S., Ghani, A., Myers, R., Verma, M., Shostak, B., Ogden, A., Krueger, C. B., Costa Netto, J. R., Zandalinas, S. I., Joshi, T., Fritschi, F. B., Mittler, R.

Date: 2025-05-11 · Version: 1

DOI: 10.1101/2025.05.07.652738

Model Organism: Glycine max

water deficit heat stress combined stress field transcriptomics soybean

Divergence of root system traits in soybean between breeding and diversity lines

Authors: Bogati, S., Carpenter, J., Jung, J., Schafer, S. E., Danao, J., Woods, E., Song, Q., kantar, M., Ma, J., Wang, D. R.

Date: 2025-05-06 · Version: 1

DOI: 10.1101/2025.05.05.651701

Model Organism: Glycine max

root system architecture soybean breeding lines vs. landraces phenotypic plasticity 3D photogrammetry

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