Keywords: paralog processing, ascorbate, comparative transcriptomics, transcriptome, metabolomics

Latest 33 Papers

Tomato leaf transcriptomic changes promoted by long-term water scarcity stress can be largely prevented by a fungal-based biostimulant

Authors: Lopez-Serrano, L., Ferez-Gomez, A., Romero-Aranda, R., Jaime Fernandez, E., Leal Lopez, J., Fernandez Baroja, E., Almagro, G., Dolezal, K., Novak, O., Diaz, L., Bautista, R., Leon Morcillo, R. J., Pozueta Romero, J.

Date: 2025-06-28 · Version: 1

DOI: 10.1101/2025.06.26.661737

Model Organism: Solanum lycopersicum

water deficit Trichoderma harzianum culture filtrate tomato drought tolerance transcriptome

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

2-Oxoglutarate-dependent dioxygenases contribute to cardenolide biosynthesis in Erysimum cheiranthoides (wormseed wallflower)

Authors: Younkin, G., Holland, C. K., Jander, G.

Date: 2025-04-16 · Version: 1

DOI: 10.1101/2025.04.10.648230

Model Organism: Erysimum cheiranthoides

cardenolide biosynthesis 2‑oxoglutarate‑dependent dioxygenases hydroxylation comparative transcriptomics enzyme modeling

Comparative transcriptomics uncovers plant and fungal genetic determinants of mycorrhizal compatibility

Authors: Marques-Galvez, J. E., de Freitas Pereira, M., Nehls, U., Ruytinx, J., Barry, K., Peter, M., Martin, F., Grigoriev, I. V., Veneault-Fourrey, C., Kohler, A.

Date: 2025-04-14 · Version: 1

DOI: 10.1101/2025.04.11.648352

Model Organism: Populus

ectomycorrhizal symbiosis poplar comparative transcriptomics gene regulons compatibility

High radiosensitivity in the conifer Norway spruce (Picea abies) due to lesscomprehensive mobilisation of protection and repair responses compared to the radiotolerant Arabidopsis thaliana

Authors: Bhattacharjee, P., Blagojevic, D., Lee, Y., Gillard, G. B., Gronvold, L., Hvidsten, T. R., Sandve, S. R., Lind, O. C., Salbu, B., Brede, D. A., Olsen, J. E.

Date: 2025-04-14 · Version: 3

DOI: 10.1101/2023.11.20.562501

Model Organism: Multi-species

ionising radiation radiosensitivity comparative transcriptomics DNA damage repair antioxidant response

Transcriptional plasticity of fast core chromosomes governs establishment of a fungal pathogen on evolutionarily distant plant lineages

Authors: Srivastava, V., Kaushik L S, S., Pullagurla, N. J., Zechmann, B., Di Pietro, A., Laha, D., Redkar, A.

Date: 2025-03-28 · Version: 1

DOI: 10.1101/2025.03.27.645276

Model Organism: Marchantia polymorpha

Fusarium oxysporum Marchantia polymorpha effector genes fast core chromosomes comparative transcriptomics

Manipulation of in planta ethylene levels modulates the metabolome of Populus tremula x tremuloides in a microbial-dependent manner.

Authors: Fracchia, F., Guinet, F., Warion, S., Bednareck, M., Chervin, C., Engle, N. L., Tschaplinski, T. J., Veneault-Fourrey, C., Deveau, A.

Date: 2025-03-17 · Version: 1

DOI: 10.1101/2025.03.17.643694

Model Organism: Populus tremula × Populus tremuloides

ethylene signaling poplar microbiota fungal and bacterial community assembly metabolomics root exudates

Temporal analysis of physiological phenotypes identifies novel metabolic and genetic underpinnings of senescence in maize

Authors: Brar, M. S., Kumar, R., Kunduru, B., McMahan, C. S., Tharayil, N., Sekhon, R. S.

Date: 2025-03-12 · Version: 1

DOI: 10.1101/2025.03.07.641920

Model Organism: Zea mays

leaf senescence staygreen metabolomics phenylpropanoids maize

Genome sequence and RNA-seq analysis reveal genetic basis of flower coloration in the giant water lily Victoria cruziana

Authors: Nowak, M. S., Harder, B., Meckoni, S. N., Friedhoff, R., Wolff, K., Pucker, B.

Date: 2025-02-28 · Version: 2

DOI: 10.1101/2024.06.15.599162

Model Organism: Victoria cruziana

Victoria cruziana flower color change anthocyanin biosynthesis comparative transcriptomics genome assembly

Herbaria provide a valuable resource for obtaining informative mRNA

Authors: Tyszka, A. S., Chia, K.-S., Bretz, E. C., Mansour, L., Larson, D. A., Carella, P., Walker, J. F.

Date: 2025-02-17 · Version: 1

DOI: 10.1101/2025.02.12.637878

Model Organism: General

archival RNA herbarium transcriptomics transcriptome assembly plant immune receptor comparative transcriptomics

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