Keywords: paralog processing, ascorbate, deep learning, genome assembly

Latest 21 Papers

Phenotypic scoring of Canola Blackleg severity using machine learning image analysis

Authors: Hu, Q., Anderson, S. N., Gardner, S., Ernst, T. W., Koscielny, C. B., Bahia, N. S., Johnson, C. G., Jarvis, A. C., Hynek, J., Coles, N., Falak, I., Charne, D. R., Ruidiaz, M. E., Linares, J. N., Mazis, A., Stanton, D. J.

Date: 2025-07-22 · Version: 1

DOI: 10.1101/2025.07.17.665372

Model Organism: Multi-species

blackleg disease canola (Brassica spp.)deep learning image-based phenotyping disease severity scoring

RegenPGC View: Semantic Segmentation of Perennial Groundcover Cropping Systems to Restore American Croplands

Authors: Meyering, B., Schlautman, B.

Date: 2025-07-06 · Version: 1

DOI: 10.1101/2025.07.03.663038

Model Organism: General

perennial groundcovers cover cropping deep learning convolutional neural network image‑based phenotyping

Unraveling the cis-regulatory code controlling abscisic acid-dependent gene expression in Arabidopsis using deep learning

Authors: Opdebeeck, H., Smet, D., Thierens, S., Minne, M., De Beukelaer, H., Zuallaert, J., Van Bel, M., Van Montagu, M., Degroeve, S., De Rybel, B., Vandepoele, K.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657584

Model Organism: Arabidopsis thaliana

Abscisic acid Arabidopsis thaliana deep learning promoter motifs ABF binding sites

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Whole-genome sequencing reveals the molecular basis of sex determination in the dioecious wild yam Dioscorea tokoro

Authors: Kudoh, A., Natsume, S., Sugihara, Y., Kato, H., Abe, A., Oikawa, K., Shimizu, M., Itoh, K., Tsujimura, M., Takano, Y., Sakai, T., Adachi, H., Ohta, A., Ohtsu, M., Ishizaki, T., Terachi, T., Terauchi, R.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.28.650915

Model Organism: Dioscorea tokoro

dioecy sex determination XY system Dioscorea tokoro genome assembly

Deciphering the Sequence Basis and Application of Transcriptional Initiation Regulation in Plant Genomes Through Deep Learning

Authors: Gao, P., Lian, L., Feng, W., Ma, Y., Lin, J., Qin, L., Hao, S., Zhao, H., Liu, X., Yuan, J., Lin, Z., Li, X., Guan, Y., Wang, X.

Date: 2025-04-24 · Version: 1

DOI: 10.1101/2025.04.22.649999

Model Organism: Glycine max

transcription start site promoter motifs deep learning soybean domestication plant gene regulation

Structural variations contribute to subspeciation and heterosis in rice

Authors: Dan, Z., Chen, Y., Huang, W.

Date: 2025-04-14 · Version: 2

DOI: 10.1101/2024.11.03.621459

Model Organism: Oryza sativa

heterosis structural variants rice subspeciation indica japonica genome assembly

Pathogenicity and genome assembly of a Pythium aphanidermatum isolate causing damping-off in amaranth in controlled environment agriculture

Authors: Thanyasiriwat, T., Kawicha, P., MacDonald, S., Sangdee, A., Tongyoo, P., Denby, K.

Date: 2025-04-10 · Version: 1

DOI: 10.1101/2025.04.10.648180

Model Organism: Amaranthus

Pythium aphanidermatum amaranth genome assembly pathogenicity assays effector proteins

The Global Wheat Full Semantic Organ Segmentation (GWFSS) dataset

Authors: Wang, Z., Zenkl, R., Greche, L., De Solan, B., Bernigaud Samatan, L., Ouahid, S., Visioni, A., Robles-Zazueta, C. A., Pinto, F., Perez-Olivera, I., Reynolds, M. P., Zhu, C., Liu, S., D'argaignon, M.-P., Lopez-Lozano, R., Weiss, M., Marzougui, A., Roth, L., Dandrifosse, S., Carlier, A., Dumont, B., Mercatoris, B., Fernandez, J., Chapman, S., Najafian, K., Stavness, I., Wang, H., Guo, W., Virlet, N., Hawkesford, M., Chen, Z., David, E., Gillet, J., Irfan, K., Comar, A., Hund, A.

Date: 2025-03-19 · Version: 1

DOI: 10.1101/2025.03.18.642594

Model Organism: Triticum aestivum

wheat semantic segmentation computer vision deep learning phenotyping

Fiber Bragg grating based sensing system for non-destructive root phenotyping using ResNet prediction

Authors: Binder, S., Hossain, K., Bucksch, A., Fok, M.

Date: 2025-02-28 · Version: 2

DOI: 10.1101/2024.09.17.613457

Model Organism: Zea mays

root architecture fiber Bragg grating real-time phenotyping deep learning Zea mays

PreviousPage 2 of 3Next