Keywords: paralog processing, ascorbate, spatial transcriptomics, phylogenetic analysis

Latest 28 Papers

Imputation integrates single-cell and spatial gene expression data to resolve transcriptional networks in barley shoot meristem development

Authors: Demesa-Arevalo, E., Dorpholz, H., Vardanega, I., Maika, J. E., Pineda-Valentino, I., Eggels, S., Lautwein, T., Kohrer, K., Schnurbusch, T., von Korff, M., Usadel, B., Simon, R.

Date: 2025-05-11 · Version: 1

DOI: 10.1101/2025.05.09.653223

Model Organism: Hordeum vulgare

Barley (Hordeum vulgare)inflorescence meristems single-cell RNA sequencing spatial transcriptomics developmental gene regulation

Rapid population flux in bacterial spot xanthomonads during a transition in dominance between two genotypes in consecutive tomato production seasons and identification of a new species Xanthomonas oklahomensis sp. nov.

Authors: Johnson, B., Subedi, A., Damicone, J., Goss, E., Jones, J. B., Jibrin, M. O.

Date: 2025-04-16 · Version: 1

DOI: 10.1101/2025.04.13.648550

Model Organism: Solanum lycopersicum

bacterial spot Xanthomonas euvesicatoria population shift phylogenetic analysis copper resistance

The auxin gatekeepers: Evolution and diversification of the YUCCA family

Authors: Vijayanathan, M., Faryad, A., Abeywickrama, T. D., Christensen, J. M., Neilson, E. H.

Date: 2025-04-14 · Version: 1

DOI: 10.1101/2025.04.11.648386

Model Organism: Multi-species

YUCCA gene family indole-3-acetic acid phylogenetic analysis gene family diversification auxin biosynthesis

Archaeological Bolivian maize genomes suggest Inca cultural expansion augmented maize diversity in South America

Authors: Chen, H., Baetsen-Young, A., Thompson, A., Day, B., Madzima, T., Wasef, S., Rivera Casanovas, C., Lovis, W., Wrobel, G.

Date: 2025-04-01 · Version: 1

DOI: 10.1101/2025.03.31.646424

Model Organism: Zea mays

ancient maize biocultural selection Inca agriculture phylogenetic analysis seed traits

Pangenome insights into structural variation and functional diversification of barley CCT motif genes

Authors: Zhu, Z., Stein, N.

Date: 2025-03-19 · Version: 1

DOI: 10.1101/2025.03.19.643958

Model Organism: Hordeum vulgare

CCT motif genes barley pangenome gene family diversification VRN2 floral repressor phylogenetic analysis

The minimal cell-cycle control system in Marchantia as a framework for understanding plant cell proliferation

Authors: Romani, F., Bonter, I., Rebmann, M., Takahashi, G., Guzman-Chavez, F., De Batte, F., Hirakawa, Y., Haseloff, J.

Date: 2025-03-13 · Version: 1

DOI: 10.1101/2025.03.12.642684

Model Organism: Marchantia polymorpha

Cyclin-CDK regulation Marchantia polymorpha single-cell RNA sequencing phylogenetic analysis fluorescent reporter imaging

Phenotypic similarity of NAD(P)-Malic Enzymes in Tomato: Unveiling Patterns of Convergent and Parallel Evolution

Authors: Martinatto, A., Bohm, J. M., Bustamante, C., Pancaldi, F., Schranz, M. E., Tronconi, M.

Date: 2025-02-16 · Version: 1

DOI: 10.1101/2025.02.12.637823

Model Organism: Solanum lycopersicum

malic enzyme NADP-ME Solanum lycopersicum gene expression phylogenetic analysis

MOLECULAR AND MORPHOMETRIC APPROACHES IN RECENTLY RADIATED SPECIES: Inga subnuda SALZM. EX BENTH AND Inga vera WILLD. (LEGUMINOSAE, MIMOSOID CLADE)

Authors: Badia, C. C. V., Garcia, F. C. P., Muller, L. A. C., Fregonezi, J. N.

Date: 2025-02-03 · Version: 1

DOI: 10.1101/2025.02.01.636048

Model Organism: Inga subnuda

Inga subnuda species delimitation plastid trnD‑trnT spacer nuclear ITS phylogenetic analysis

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