Keywords: paralog processing, ascorbate, spatial transcriptomics, transcriptome, phylogenetic analysis

Latest 30 Papers

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Imputation integrates single-cell and spatial gene expression data to resolve transcriptional networks in barley shoot meristem development

Authors: Demesa-Arevalo, E., Dorpholz, H., Vardanega, I., Maika, J. E., Pineda-Valentino, I., Eggels, S., Lautwein, T., Kohrer, K., Schnurbusch, T., von Korff, M., Usadel, B., Simon, R.

Date: 2025-05-11 · Version: 1

DOI: 10.1101/2025.05.09.653223

Model Organism: Hordeum vulgare

Barley (Hordeum vulgare)inflorescence meristems single-cell RNA sequencing spatial transcriptomics developmental gene regulation

Rapid population flux in bacterial spot xanthomonads during a transition in dominance between two genotypes in consecutive tomato production seasons and identification of a new species Xanthomonas oklahomensis sp. nov.

Authors: Johnson, B., Subedi, A., Damicone, J., Goss, E., Jones, J. B., Jibrin, M. O.

Date: 2025-04-16 · Version: 1

DOI: 10.1101/2025.04.13.648550

Model Organism: Solanum lycopersicum

bacterial spot Xanthomonas euvesicatoria population shift phylogenetic analysis copper resistance

The auxin gatekeepers: Evolution and diversification of the YUCCA family

Authors: Vijayanathan, M., Faryad, A., Abeywickrama, T. D., Christensen, J. M., Neilson, E. H.

Date: 2025-04-14 · Version: 1

DOI: 10.1101/2025.04.11.648386

Model Organism: Multi-species

YUCCA gene family indole-3-acetic acid phylogenetic analysis gene family diversification auxin biosynthesis

Archaeological Bolivian maize genomes suggest Inca cultural expansion augmented maize diversity in South America

Authors: Chen, H., Baetsen-Young, A., Thompson, A., Day, B., Madzima, T., Wasef, S., Rivera Casanovas, C., Lovis, W., Wrobel, G.

Date: 2025-04-01 · Version: 1

DOI: 10.1101/2025.03.31.646424

Model Organism: Zea mays

ancient maize biocultural selection Inca agriculture phylogenetic analysis seed traits

Pangenome insights into structural variation and functional diversification of barley CCT motif genes

Authors: Zhu, Z., Stein, N.

Date: 2025-03-19 · Version: 1

DOI: 10.1101/2025.03.19.643958

Model Organism: Hordeum vulgare

CCT motif genes barley pangenome gene family diversification VRN2 floral repressor phylogenetic analysis

The minimal cell-cycle control system in Marchantia as a framework for understanding plant cell proliferation

Authors: Romani, F., Bonter, I., Rebmann, M., Takahashi, G., Guzman-Chavez, F., De Batte, F., Hirakawa, Y., Haseloff, J.

Date: 2025-03-13 · Version: 1

DOI: 10.1101/2025.03.12.642684

Model Organism: Marchantia polymorpha

Cyclin-CDK regulation Marchantia polymorpha single-cell RNA sequencing phylogenetic analysis fluorescent reporter imaging

Phenotypic similarity of NAD(P)-Malic Enzymes in Tomato: Unveiling Patterns of Convergent and Parallel Evolution

Authors: Martinatto, A., Bohm, J. M., Bustamante, C., Pancaldi, F., Schranz, M. E., Tronconi, M.

Date: 2025-02-16 · Version: 1

DOI: 10.1101/2025.02.12.637823

Model Organism: Solanum lycopersicum

malic enzyme NADP-ME Solanum lycopersicum gene expression phylogenetic analysis

MOLECULAR AND MORPHOMETRIC APPROACHES IN RECENTLY RADIATED SPECIES: Inga subnuda SALZM. EX BENTH AND Inga vera WILLD. (LEGUMINOSAE, MIMOSOID CLADE)

Authors: Badia, C. C. V., Garcia, F. C. P., Muller, L. A. C., Fregonezi, J. N.

Date: 2025-02-03 · Version: 1

DOI: 10.1101/2025.02.01.636048

Model Organism: Inga subnuda

Inga subnuda species delimitation plastid trnD‑trnT spacer nuclear ITS phylogenetic analysis

Transcriptome responses of two Halophila stipulacea seagrass populations from pristine and impacted habitats, to single and combined thermal and excess nutrient stressors, reveal local adaptive features and core stress-response genes

Authors: Nguyen, H. M., Yaakov, B., Beca-Carretero, P., Procaccini, G., Wang, G., Dassanayake, M., Winters, G., Barak, S.

Date: 2025-01-27 · Version: 2

DOI: 10.1101/2025.01.21.634158

Model Organism: Halophila stipulacea

Halophila stipulacea thermal stress nutrient stress combined stressors transcriptome

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