Keywords: paralog processing, ascorbate, spatial transcriptomics, untargeted metabolomics

Latest 20 Papers

Unravelling Induced Resistance in Strawberry: Distinct Metabolomic Signatures Define Cultivar-Specific Resistance to Botrytis cinerea

Authors: Murena, C., Pastor, V., Fernandes, T. R., Carvalho, S. M. P., Luna, E.

Date: 2025-08-01 · Version: 1

DOI: 10.1101/2025.07.29.667391

Model Organism: Fragaria x ananassa

Botrytis cinerea induced resistance Fragaria x ananassa elicitor treatment untargeted metabolomics

Impact of Long-Term Cover Cropped Organic Farming Practices on the Development of Disease Suppressive Soils

Authors: Ghile, N. T., Bardhan, S., Lin, C.-H.

Date: 2025-07-30 · Version: 1

DOI: 10.1101/2025.07.28.667314

Model Organism: General

disease-suppressive soil organic farming cover crops untargeted metabolomics rhizosphere chemistry

Plant-Compatible Xenium In Situ Sequencing: Optimised Protocol for Spatial Transcriptomics in Medicago truncatula Roots and Nodules

Authors: Jhu, M.-Y., Heffer, J., Deamer, A., Moraes, T. A., Piskorz, A. M., Xia, C.

Date: 2025-07-25 · Version: 1

DOI: 10.1101/2025.07.22.663073

Model Organism: Medicago truncatula

spatial transcriptomics Xenium in situ sequencing Medicago truncatula root nodules autofluorescence mitigation

Spatial transcriptomics of developing wheat seed reveals radial expression patterns in endosperm and subgenome biased expression of key genes

Authors: Millsteed, T., Kainer, D., Sullivan, R., Sun, X., Li, K. L., Mao, L., Macdonald, A., Henry, R. J.

Date: 2025-06-08 · Version: 1

DOI: 10.1101/2025.06.08.658529

Model Organism: Triticum aestivum

spatial transcriptomics wheat seed development endosperm gene expression subgenome bias STOmics platform

Spatial and single-cell transcriptomics capture two distinct cell states in plant immunity

Authors: Hu, Y., Schaefer, R., Rendleman, M., Slattery, A., Cramer, A., Nahiyan, A., Breitweiser, L., Shah, M., Kaehler, E., Yao, C., Bowling, A., Crow, J., May, G., Tabor, G., Thatcher, S., Uppalapati, S. R., Muppirala, U., Deschamps, S.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657683

Model Organism: Glycine max

spatial transcriptomics single-nuclei RNA-seq plant immunity Phakopsora pachyrhizi cell non‑autonomous defense

FMO and CYP monooxygenase families determine the metabolic flux of hydroxylated tryptamine derivatives in barley (Hordum vulgare) following pathogen infection

Authors: Christensen, J. M., Toldam-Andersen, M. M., Jorgensen, H. J., Micic, N., Bjarnholt, N., Vijayanathan, M., Motawie, M. S., Pizaine, M., Günther, J., Kjaerulff, L., Staerk, D., Burow, M., Thodberg, S., Neilson, E. H.

Date: 2025-05-28 · Version: 1

DOI: 10.1101/2025.05.25.656007

Model Organism: Hordeum vulgare

Barley (Hordeum vulgare)Pyrenophora teres f. teres untargeted metabolomics indole alkaloids flavin‑containing monooxygenase

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Imputation integrates single-cell and spatial gene expression data to resolve transcriptional networks in barley shoot meristem development

Authors: Demesa-Arevalo, E., Dorpholz, H., Vardanega, I., Maika, J. E., Pineda-Valentino, I., Eggels, S., Lautwein, T., Kohrer, K., Schnurbusch, T., von Korff, M., Usadel, B., Simon, R.

Date: 2025-05-11 · Version: 1

DOI: 10.1101/2025.05.09.653223

Model Organism: Hordeum vulgare

Barley (Hordeum vulgare)inflorescence meristems single-cell RNA sequencing spatial transcriptomics developmental gene regulation

Untargeted metabolomics reveals key metabolites and genes underlying salinity tolerance mechanisms in maize

Authors: Brar, M. S., De Souza, A., Ghai, A., Ferreira, J. F. S., Sandhu, D., Sekhon, R.

Date: 2025-04-14 · Version: 1

DOI: 10.1101/2025.04.08.647850

Model Organism: Zea mays

salt tolerance maize untargeted metabolomics flavonoids candidate genes

Metabolomics characterisation of cassava pre-breeding populations with enhanced whitefly tolerance

Authors: Perez-Fons, L., Bohorquez, A., Gomez Jimenez, M. I., Becerra Lopez-Lavalle, L. A., Fraser, P. D.

Date: 2025-02-08 · Version: 1

DOI: 10.1101/2025.02.05.636665

Model Organism: Manihot esculenta

Cassava (Manihot esculenta)whitefly resistance bi‑parental population untargeted metabolomics LC‑MS

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