Keywords: paralog processing, ascorbate, transcriptome, CO2 enrichment, deep learning, autophagy

Latest 31 Papers

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Deciphering the Sequence Basis and Application of Transcriptional Initiation Regulation in Plant Genomes Through Deep Learning

Authors: Gao, P., Lian, L., Feng, W., Ma, Y., Lin, J., Qin, L., Hao, S., Zhao, H., Liu, X., Yuan, J., Lin, Z., Li, X., Guan, Y., Wang, X.

Date: 2025-04-24 · Version: 1

DOI: 10.1101/2025.04.22.649999

Model Organism: Glycine max

transcription start site promoter motifs deep learning soybean domestication plant gene regulation

The autophagy-related genes AtATG5 and AtATG7 influence reserve mobilisation and responses to ABA during seed germination in Arabidopsis thaliana

Authors: Contreras, E., Sanchez-Vicente, I., Pastor-Mora, E., Aylon-Rodriguez, M., Gonzalez-Ceballos, M., Delgado-Gutierrez, M. A., Lorenzo, O., Vicente-Carbajosa, J., Iglesias-Fernandez, R.

Date: 2025-04-21 · Version: 2

DOI: 10.1101/2024.05.15.593177

Model Organism: Arabidopsis thaliana

autophagy Arabidopsis thaliana ABA signaling ATG5/ATG7 ABI5

Root hair lifespan is antagonistically controlled by autophagy and programmed cell death

Authors: Feng, Q., Zhu, S., Wang, X., Liu, Y., Zhao, J., Dagdas, Y., Nowack, M. K.

Date: 2025-03-19 · Version: 1

DOI: 10.1101/2025.03.18.643910

Model Organism: Arabidopsis thaliana

root hair longevity autophagy ATG2 ATG5 ATG7 NAC transcription factors programmed cell death

The Global Wheat Full Semantic Organ Segmentation (GWFSS) dataset

Authors: Wang, Z., Zenkl, R., Greche, L., De Solan, B., Bernigaud Samatan, L., Ouahid, S., Visioni, A., Robles-Zazueta, C. A., Pinto, F., Perez-Olivera, I., Reynolds, M. P., Zhu, C., Liu, S., D'argaignon, M.-P., Lopez-Lozano, R., Weiss, M., Marzougui, A., Roth, L., Dandrifosse, S., Carlier, A., Dumont, B., Mercatoris, B., Fernandez, J., Chapman, S., Najafian, K., Stavness, I., Wang, H., Guo, W., Virlet, N., Hawkesford, M., Chen, Z., David, E., Gillet, J., Irfan, K., Comar, A., Hund, A.

Date: 2025-03-19 · Version: 1

DOI: 10.1101/2025.03.18.642594

Model Organism: Triticum aestivum

wheat semantic segmentation computer vision deep learning phenotyping

Cell-type specific autophagy in root hair forming cells is essential for salt stress tolerance in Arabidopsis thaliana

Authors: Zhao, J., Loefke, C., Yeung, K. C., Chen, Y., Dagdas, Y.

Date: 2025-03-18 · Version: 1

DOI: 10.1101/2025.03.18.643786

Model Organism: Arabidopsis thaliana

autophagy trichoblast Arabidopsis thaliana salt stress cell-type-specific regulation

Bacteria use processing body condensates to attenuate host translation during infection

Authors: Gonzalez-Fuente, M., Schulz, N., Abdrakhmanov, A., Izzati, G., Zhu, S., Langin, G., Gouguet, P., Franz-Wachtel, M., Macek, B., Hafren, A., Dagdas, Y., Üstün, S.

Date: 2025-03-11 · Version: 2

DOI: 10.1101/2025.01.09.632196

Model Organism: General

Pseudomonas syringae processing bodies translation attenuation ER stress response autophagy

Fiber Bragg grating based sensing system for non-destructive root phenotyping using ResNet prediction

Authors: Binder, S., Hossain, K., Bucksch, A., Fok, M.

Date: 2025-02-28 · Version: 2

DOI: 10.1101/2024.09.17.613457

Model Organism: Zea mays

root architecture fiber Bragg grating real-time phenotyping deep learning Zea mays

Melatonin-mediated methylglyoxal homeostasis and regulation of autophagy during seed germination under PEG-induced drought stress in upland cotton

Authors: Dake, D., Laha, S., Kumar, A., Gudipalli, P.

Date: 2025-02-23 · Version: 1

DOI: 10.1101/2025.02.18.638685

Model Organism: Gossypium hirsutum

melatonin priming methylglyoxal detoxification drought stress autophagy glyoxalase system

Lack of AtMC1 catalytic activity triggers autoimmunity dependent on NLR stability

Authors: Salguero-Linares, J., Armengot, L., Ayet, J., Ruiz-Solani, N., Saile, S., Salas-Gomez, M., Fernandez, E., Denolf, L., Navarrete, F., Krumbach, J., Kaiser, M., Stael, S., Van Breusegem, F., Gevaert, K., Kaschani, F., petersen, m., El Kasmi, F., Valls, M., Coll, N. S.

Date: 2025-02-03 · Version: 1

DOI: 10.1101/2025.01.31.635913

Model Organism: Arabidopsis thaliana

metacaspase 1 autoimmunity NLR homeostasis SNIPER1 autophagy

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