Keywords: paralog processing, ascorbate, transcriptome reprogramming, CRISPR/Cas9, transcriptomics

Latest 56 Papers

A CRISPR/Cas9-induced restoration of bioluminescence reporter system for single-cell gene expression analysis in plants

Authors: Ueno, R., Ito, S., Oyama, T.

Date: 2025-05-30 · Version: 1

DOI: 10.1101/2025.05.27.656507

CRISPR/Cas9 bioluminescence reporter particle bombardment single‑cell gene expression Arabidopsis thaliana

Fine-tuning quantitative agronomic traits by manipulating gene copy number in rice

Authors: Nomura, C., Kanzaki, H., Kanzaki, E., Shimizu, M., Oikawa, K., Utsushi, H., Ito, K., Sugimura, Y., Terauchi, R., Abe, A.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.16.654416

Model Organism: Oryza sativa

copy number variation OsMADS18 CRISPR/Cas9 rice (Oryza sativa)agronomic trait improvement

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Comparative multi-omics profiling of Gossypium hirsutum and Gossypium barbadense fibers at high temporal resolution reveals key differences in polysaccharide composition and associated glycosyltransferases

Authors: Swaminathan, S., Lee, Y., Grover, C. E., DeTemple, M. F., Mugisha, A. S., Sichterman, L. E., Yang, P., Xie, J., Wendel, J. F., Szymanski, D. B., Zabotina, O. A.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.26.650795

Model Organism: Multi-species

cotton fiber development polysaccharide composition glycome profiling transcriptomics glycosyltransferases

SnRK1.1 Coordinates Organ-Specific Growth-Defense Programs via Transcriptomic Rewiring in Arabidopsis thaliana

Authors: Kalachova, T., Muller, K., Lacek, J., Pree, S., Antonova, A., Bondarenko, O., Burketova, L., Retzer, K., Weckwerth, W.

Date: 2025-04-29 · Version: 1

DOI: 10.1101/2025.04.25.650715

Model Organism: Arabidopsis thaliana

SnRK1 KIN10 transcriptome reprogramming plant immunity tissue-specific signaling

ERF transcription factor regulons underpin growth-defence trade-off under acute heat stress in rice seedlings

Authors: Nair, A. U., Vishwakarma, S., Guha, T., Kadumuri, R. V., Fritschi, F. B., Chavali, S., Allu, A. D.

Date: 2025-04-22 · Version: 1

DOI: 10.1101/2025.04.21.649784

Model Organism: Oryza sativa

heat stress Oryza sativa seedling transcriptomics ethylene responsive factors phytohormone treatment

A tRNA-gRNA multiplexing system for CRISPR genome editing in Marchantia polymorpha.

Authors: Frangedakis, E., Yelina, N., Eeda, S. K., Romani, F., Fragkidis, A., Haseloff, J., Hibberd, J.

Date: 2025-04-20 · Version: 1

DOI: 10.1101/2025.04.18.649274

Model Organism: Marchantia polymorpha

CRISPR/Cas9 multiplex gRNA expression tRNA-mediated processing Marchantia polymorpha thallus transformation

A transcriptional dissection of the petty spurge (Euphorbia peplus L.) reproductive structure

Authors: Johnson, A. R., Bao, A., Frank, M. H.

Date: 2025-04-17 · Version: 2

DOI: 10.1101/2024.05.06.592779

Model Organism: Euphorbia peplus

cyathium transcriptomics floral development genes SEP1 paralogs Euphorbia peplus

Welcome pathogens: transient heat dampens the responses to acibenzolar-S-methyl beyond defenses in apple plants

Authors: Chavonet, E., Nguyen, B.-h., Heintz, C., Cournol, R., Siroka, J., Novak, O., Larbat, R., Gaucher, M., Brisset, M.-N., Pantin, F., Degrave, A.

Date: 2025-04-06 · Version: 1

DOI: 10.1101/2025.04.03.647103

Model Organism: Malus domestica

heat stress acibenzolar‑S‑methyl (ASM)induced immunity apple (Malus domestica)transcriptomics

Molecular mechanisms underlying the determination of axillary bud fate and outgrowth into branch crown in strawberry

Authors: Alonso, M., Prevost, P., Potier, A., Martin, P. G., Caraglio, Y., Nicolas, M., Hernould, M., Rothan, C., Denoyes, B., Gaston, A.

Date: 2025-03-28 · Version: 1

DOI: 10.1101/2025.03.27.645709

Model Organism: Fragaria vesca

axillary bud fate stolon vs branch crown RNA-seq FveBRC1 CRISPR/Cas9

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